Time-Resolved Fluorescence Assays

  • Protocol
  • First Online:
High Throughput Screening

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1439))

  • 4019 Accesses

Abstract

Fluorescence-based detection techniques are popular in high throughput screening due to sensitivity and cost-effectiveness. Four commonly used techniques exist, each with distinct characteristics. Fluorescence intensity assays are the simplest to run, but suffer the most from signal interference. Fluorescence polarization assays show less interference from the compounds or the instrument, but require a design that results in change of fluorophore-containing moiety size and usually have narrow assay signal window. Fluorescence resonance energy transfer (FRET) is commonly used for detecting protein-protein interactions and is constrained not by the sizes of binding partners, but rather by the distance between fluorophores. Time-resolved fluorescence resonance energy transfer (TR-FRET), an advanced modification of FRET approach utilizes special fluorophores with long-lived fluorescence and earns its place near the top of fluorescent techniques list by its performance and robustness, characterized by larger assay window and minimized compound spectral interference. TR-FRET technology can be applied in biochemical or cell-based in vitro assays with ease. It is commonly used to detect modulation of protein-protein interactions and in detection of products of biochemical reactions and cellular activities.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
EUR 32.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or Ebook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Protocol
EUR 44.95
Price includes VAT (Germany)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
EUR 80.24
Price includes VAT (Germany)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
EUR 101.64
Price includes VAT (Germany)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free ship** worldwide - see info
Hardcover Book
EUR 139.09
Price includes VAT (Germany)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free ship** worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Cardullo RA (2013) Theoretical principles and practical considerations for fluorescence resonance energy transfer microscopy. Methods Cell Biol 114:441–456

    Article  Google Scholar 

  2. Carlson CB, Horton RA, Vogel KW (2009) A toolbox approach to high-throughput TR-FRET-based SUMOylation and DeSUMOylation assays. Assay Drug Dev Technol 7(4):348–355

    Article  CAS  Google Scholar 

  3. Degorce F et al (2009) HTRF: a technology tailored for drug discovery - a review of theoretical aspects and recent applications. Curr Chem Genomics 3:22–32

    Article  CAS  Google Scholar 

  4. Zhang WG, Shor B, Yu K (2006) Identification and characterization of a constitutively T-loop phosphorylated and active recombinant S6K1: expression, purification, and enzymatic studies in a high capacity non-radioactive TR-FRET Lance assay. Protein Expr Purif 46(2):414–420

    Article  CAS  Google Scholar 

  5. Madiraju C et al (2012) TR-FRET-based high-throughput screening assay for identification of UBC13 inhibitors. J Biomol Screen 17(2):163–176

    Article  CAS  Google Scholar 

  6. Fernandez-Duenas V et al (2012) Fluorescence resonance energy transfer-based technologies in the study of protein-protein interactions at the cell surface. Methods 57(4):467–472

    Article  CAS  Google Scholar 

  7. Alontaga AY et al (2015) Design of high-throughput screening assays and identification of a SUMO1-specific small molecule chemotype targeting the SUMO-interacting motif-binding surface. ACS Comb Sci 17(4):239–246

    Article  CAS  Google Scholar 

  8. Namanja AT et al (2012) Insights into high affinity small ubiquitin-like modifier (SUMO) recognition by SUMO-interacting motifs (SIMs) revealed by a combination of NMR and peptide array analysis. J Biol Chem 287(5):3231–3240

    Article  CAS  Google Scholar 

  9. Song J et al (2005) Small ubiquitin-like modifier (SUMO) recognition of a SUMO binding motif: a reversal of the bound orientation. J Biol Chem 280(48):40122–40129

    Article  CAS  Google Scholar 

  10. Petroski MD (2010) Mechanism-based neddylation inhibitor. Chem Biol 17(1):6–8

    Article  CAS  Google Scholar 

  11. Toth JI et al (2012) A gatekeeper residue for NEDD8-activating enzyme inhibition by MLN4924. Cell Rep 1(4):309–316

    Article  CAS  Google Scholar 

Download references

Acknowledgments

This work was supported by NIH Roadmap Initiatives grants U54HG003916 and U54HG005033. The protein-protein interactions protocol has been developed in a collaborative project with Dr. Yuan Chen (City of Hope). The enzymatic activity protocol has been developed in collaboration with Dr. Matt Petroski (Sanford-Burnham-Prebys MDI).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Eduard A. Sergienko Ph.D. .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2016 Springer Science+Business Media New York

About this protocol

Cite this protocol

Ma, CT., Sergienko, E.A. (2016). Time-Resolved Fluorescence Assays. In: Janzen, W. (eds) High Throughput Screening. Methods in Molecular Biology, vol 1439. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-3673-1_8

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-3673-1_8

  • Published:

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-3671-7

  • Online ISBN: 978-1-4939-3673-1

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics

Navigation