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Exploring Genomic Sequence Alignment for Improving Side-Channel Analysis
Side-channel analysis (SCA) extracts sensitive information from a device by analyzing information that is leaked through side channels. These...
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BRCA1 Genomic Sequence-Based Early Stage Breast Cancer Detection
Breast cancer is one of the most common types of cancer found in more than half of women worldwide, and the main cause of breast cancer is due to...
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Validating by Deep Learning an Efficient Method for Genomic Sequence Analysis: Genomic Spectrograms
Traditionally, comparative and simultaneous analysis of multiple genomic sequences is performed using multiple sequence alignment algorithms....
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Genomic benchmarks: a collection of datasets for genomic sequence classification
BackgroundRecently, deep neural networks have been successfully applied in many biological fields. In 2020, a deep learning model AlphaFold won the...
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Genomic Instability
Maintenance of genome stability is vital for human health, and it is of particular importance in ageing. Genome stability is regulated by multiple...
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Draft genome sequence and comparative genomic analysis of Penicillium pancosmium MUM 23.27 isolated from raw honey
The draft genome sequence and main genomic features of Penicillium pancosmium MUM 23.27, isolated from Portuguese raw honey are reported. The genome...
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Genomic analyses of withers height and linear conformation traits in German Warmblood horses using imputed sequence-level genotypes
BackgroundBody conformation, including withers height, is a major selection criterion in horse breeding and is associated with other important...
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Using pre-selected variants from large-scale whole-genome sequence data for single-step genomic predictions in pigs
BackgroundWhole-genome sequence (WGS) data harbor causative variants that may not be present in standard single nucleotide polymorphism (SNP) chip...
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Explainable Artificial Intelligence in Genomic Sequence for Healthcare Systems Prediction
Various Classification techniques have been developed in past years and applied on genomic sequence for the dynamic modelling. These methods have...
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Genomic prediction with whole-genome sequence data in intensely selected pig lines
BackgroundEarly simulations indicated that whole-genome sequence data (WGS) could improve the accuracy of genomic predictions within and across...
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Improving the accuracy of genomic prediction for meat quality traits using whole genome sequence data in pigs
BackgroundPork quality can directly affect customer purchase tendency and meat quality traits have become valuable in modern pork production....
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A sequence-aware merger of genomic structural variations at population scale
Merging structural variations (SVs) at the population level presents a significant challenge, yet it is essential for conducting comprehensive...
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Improving Bacterial sRNA Identification By Combining Genomic Context and Sequence-Derived Features
Bacterial small non-coding RNAs (sRNAs) are ubiquitous regulatory RNAs involved in controlling several cellular processes by targeting multiple...
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The Complete Genomic Sequence of Microbial Transglutaminase Producer, Streptomyces mobaraensis DSM40587
Actinomycetes are remarkable natural sources of active natural molecules and enzymes of considerable industrial value. Streptomyces mobaraensis is...
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Genomic Islands in Uropathogenic Escherichia coli
Discrete DNA segments known as genomic islands are responsible for establishing horizontally transmitted genes in a population. This region might be...
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Sequence-Based Classification and Identification
You will be introduced to the classification of prokaryotes from species to the higher levels of class and phyla. You will learn that the 16S rRNA...
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Genome sequence and genomic analysis of liver abscess caused by hypervirulent Klebsiella pneumoniae
Hypervirulent Klebsiella pneumoniae (hvKp) is an important pathotype with enhanced virulence features compared with classical K. pneumoniae (cKp)....
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Genomic dissection of the correlation between milk yield and various health traits using functional and evolutionary information about imputed sequence variants of 34,497 German Holstein cows
BackgroundOver the last decades, it was subject of many studies to investigate the genomic connection of milk production and health traits in dairy...
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Complete genomic sequence of turnip mosaic virus infecting passionfruit in Fujian province of China
Contigs with sequence identities to turnip mosaic virus (TuMV) were detected by deep sequencing of the small RNAs extracted from a passion fruit ( Pass...
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Distribution and conservation of simple sequence repeats in plant pathogenic species of Zymoseptoria and development of genomic resources for its orphaned species
To better understand the structure and evolution of the genomes of four plant pathogenic species of Zymoseptoria , we analyzed the occurrence,...
