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Protein language models trained on multiple sequence alignments learn phylogenetic relationships
Self-supervised neural language models with attention have recently been applied to biological sequence data, advancing structure, function and...
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Phylogenetic relationships, selective pressure and molecular markers development of six species in subfamily Polygonoideae based on complete chloroplast genomes
The subfamily Polygonoideae encompasses a diverse array of medicinal and horticultural plants that hold significant economic value. However, due to...
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Phylogenetic relationships of sleeper gobies (Eleotridae: Gobiiformes: Gobioidei), with comments on the position of the miniature genus Microphilypnus
Microphilypnus and Leptophilypnion are miniaturized genera within the family Eleotridae. The evolutionary relationships among these taxa are still...
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Nesting biology and phylogenetic relationships of the parasitoid-hunting wasp Lindenius pygmaeus armatus (Vander Linden, 1829) (Hymenoptera: Crabronidae)
Nests of Lindenius pygmaeus armatus were examined in northern Poland in Kowalewo Pomorskie and Sierakowo. Adults were encountered from late May to...
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Comparative chloroplast genomics, phylogenetic relationships and molecular markers development of Aglaonema commutatum and seven green cultivars of Aglaonema
Aglaonema commutatum is a famous species in the Aglaonema genus, which has important ornamental and economic value. However, its chloroplast genome...
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Effects of climate and environmental heterogeneity on the phylogenetic structure of regional angiosperm floras worldwide
The tendency of species to retain ancestral ecological distributions (phylogenetic niche conservatism) is thought to influence which species from a...
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The complete mitochondrial genome of Leucoptera coffeella (Lepidoptera: Lyonetiidae) and phylogenetic relationships within the Yponomeutoidea superfamily
The coffee leaf miner ( Leucoptera coffeella ) is one of the major pests of coffee crops in the neotropical regions, and causes major economic losses....
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Complete chloroplast genomes and phylogenetic relationships of Pedicularis chinensis and Pedicularis kansuensis
The complete cp genomes of Pedicularis chinensis (GenBank accession number: OQ587614) and Pedicularis kansuensis (GenBank accession number: OQ587613)...
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Comparative chloroplast genome analysis of seven extant Citrullus species insight into genetic variation, phylogenetic relationships, and selective pressure
Citrullus ecirrhosus , Citrullus rehmii , and Citrullus naudinianus are three important related wild species of watermelon in the genus Citrullus , and...
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Phylogenetic inference from single-cell RNA-seq data
Tumors are comprised of subpopulations of cancer cells that harbor distinct genetic profiles and phenotypes that evolve over time and during...
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Exploring phylogenetic relationships within the subgenera of Bambusa based on DNA barcodes and morphological characteristics
The genus Bambusa belongs to the subtribe Bambusinae and the subfamily Bambusoideae. The subgenera of Bambusa has not been satisfactorily...
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A sequence-based evolutionary distance method for Phylogenetic analysis of highly divergent proteins
Because of the limited effectiveness of prevailing phylogenetic methods when applied to highly divergent protein sequences, the phylogenetic analysis...
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Mitogenomics provides new insights into the phylogenetic relationships and evolutionary history of deep-sea sea stars (Asteroidea)
The deep sea (> 200 m) is considered as the largest and most remote biome, which characterized by low temperatures, low oxygen level, scarce food,...
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Comparative chloroplast genome analyses of cultivated spinach and two wild progenitors shed light on the phylogenetic relationships and variation
Spinacia is a genus of important leafy vegetable crops worldwide and includes cultivated Spinacia oleracea and two wild progenitors, Spinacia...
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Characterization of the plastid genome of Cratoxylum species (Hypericaceae) and new insights into phylogenetic relationships
To expand the genomic information of Hypericaceae, particularly on Cratoxylum , we characterized seven novel complete plastid genomes (plastomes) of...
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The complete chloroplast genome of Mussaenda pubescens and phylogenetic analysis
The chloroplast (cp) genome sequence of Mussaenda pubescens , a promising resource that is used as a traditional medicine and drink, is important for...
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Characterization of four mitochondrial genomes of family Neritidae (Gastropoda: Neritimorpha) and insight into its phylogenetic relationships
Neritidae is one of the most diverse families of Neritimorpha and possesses euryhaline properties. Members of this family usually live on tropical...
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Detailed morphological structure and phylogenetic relationships of Degeeriella punctifer (Phthiraptera: Philopteridae), a parasite of the bearded vulture Gypaetus barbatus (Accipitriformes: Accipitridae)
Habitat loss is one of the main threats to species survival and, in the case of parasites, it is their hosts that provide their habitat. Therefore,...
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Characterization of four mitochondrial genomes from superfamilies Noctuoidea and Hyblaeoidea with their phylogenetic implications
In the present study, the newly sequenced mitogenomes of three Noctuoid and one Hyblaeoid (Insecta: Lepidoptera) species were annotated based on...
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Mitogenomic phylogenetic analyses provide novel insights into the taxonomic problems of several hesperiid taxa (Lepidoptera: Hesperiidae)
Here, we present new molecular and morphological evidence that contributes towards clarifying the phylogenetic relations within the family...
