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  1. Spatial transcriptomics reveals molecular dysfunction associated with cortical Lewy pathology

    A key hallmark of Parkinson’s disease (PD) is Lewy pathology. Composed of α-synuclein, Lewy pathology is found both in dopaminergic neurons that...

    Thomas M. Goralski, Lindsay Meyerdirk, ... Michael X. Henderson in Nature Communications
    Article Open access 26 March 2024
  2. A whole-slide foundation model for digital pathology from real-world data

    Digital pathology poses unique computational challenges, as a standard gigapixel slide may comprise tens of thousands of image tiles 1 3 . Prior models...

    Hanwen Xu, Naoto Usuyama, ... Hoifung Poon in Nature
    Article Open access 22 May 2024
  3. Disease progression modelling reveals heterogeneity in trajectories of Lewy-type α-synuclein pathology

    Lewy body (LB) diseases, characterized by the aggregation of misfolded α-synuclein proteins, exhibit notable clinical heterogeneity. This may be due...

    Sophie E. Mastenbroek, Jacob W. Vogel, ... Oskar Hansson in Nature Communications
    Article Open access 15 June 2024
  4. The aldehyde dehydrogenase 2 rs671 variant enhances amyloid β pathology

    In the ALDH2 rs671 variant, a guanine changes to an adenine, resulting in a dramatic decrease in the catalytic activity of the enzyme....

    **a Wang, Jiayu Wang, ... Wei Ge in Nature Communications
    Article Open access 22 March 2024
  5. Disease-associated astrocyte epigenetic memory promotes CNS pathology

    Disease-associated astrocyte subsets contribute to the pathology of neurologic diseases, including multiple sclerosis and experimental autoimmune...

    Hong-Gyun Lee, Joseph M. Rone, ... Francisco J. Quintana in Nature
    Article 20 March 2024
  6. Regression-based Deep-Learning predicts molecular biomarkers from pathology slides

    Deep Learning (DL) can predict biomarkers from cancer histopathology. Several clinically approved applications use this technology. Most approaches,...

    Omar S. M. El Nahhas, Chiara M. L. Loeffler, ... Jakob Nikolas Kather in Nature Communications
    Article Open access 10 February 2024
  7. Gut inflammation associated with age and Alzheimer’s disease pathology: a human cohort study

    Age-related disease may be mediated by low levels of chronic inflammation (“inflammaging”). Recent work suggests that gut microbes can contribute to...

    Margo B. Heston, Kendra L. Hanslik, ... Tyler K. Ulland in Scientific Reports
    Article Open access 14 November 2023
  8. Native-state proteomics of Parvalbumin interneurons identifies unique molecular signatures and vulnerabilities to early Alzheimer’s pathology

    Dysfunction in fast-spiking parvalbumin interneurons (PV-INs) may represent an early pathophysiological perturbation in Alzheimer’s Disease (AD)....

    Prateek Kumar, Annie M. Goettemoeller, ... Srikant Rangaraju in Nature Communications
    Article Open access 01 April 2024
  9. Bridging clinic and wildlife care with AI-powered pan-species computational pathology

    Cancers occur across species. Understanding what is consistent and varies across species can provide new insights into cancer initiation and...

    Khalid AbdulJabbar, Simon P. Castillo, ... Yinyin Yuan in Nature Communications
    Article Open access 26 April 2023
  10. Three-dimensional identification of microvascular pathology and neurovascular inflammation in severe white matter hyperintensity: a case report

    White matter hyperintensities (WMH) are the most prevalent markers of cerebral small vessel disease (SVD), which is the major vascular risk factor...

    Gemma Solé-Guardia, Matthijs Luijten, ... Amanda J. Kiliaan in Scientific Reports
    Article Open access 29 February 2024
  11. An aging, pathology burden, and glial senescence build-up hypothesis for late onset Alzheimer’s disease

    Alzheimer’s disease (AD) predominantly occurs as a late onset (LOAD) form involving neurodegeneration and cognitive decline with progressive memory...

    Victor Lau, Leanne Ramer, Marie-Ève Tremblay in Nature Communications
    Article Open access 25 March 2023
  12. Adversarial attacks and adversarial robustness in computational pathology

    Artificial Intelligence (AI) can support diagnostic workflows in oncology by aiding diagnosis and providing biomarkers directly from routine...

    Narmin Ghaffari Laleh, Daniel Truhn, ... Jakob Nikolas Kather in Nature Communications
    Article Open access 29 September 2022
  13. A Multimodal Generative AI Copilot for Human Pathology

    The field of computational pathology[1,2] has witnessed remarkable progress in the development of both task-specific predictive models and...

    Ming Y. Lu, Bowen Chen, ... Faisal Mahmood in Nature
    Article 12 June 2024
  14. The mediating role of synovitis in meniscus pathology and knee osteoarthritis radiographic progression

    Meniscus pathologies (damage, extrusion) and synovitis are associated with knee osteoarthritis (KOA); however, whether synovitis mediates the...

    Hui Deng, Zhijun Chen, ... Jun Tao in Scientific Reports
    Article Open access 29 May 2024
  15. A generative adversarial network model alternative to animal studies for clinical pathology assessment

    Animal studies are unavoidable in evaluating chemical and drug safety. Generative Adversarial Networks (GANs) can generate synthetic animal data by...

    ** Chen, Ruth Roberts, ... Weida Tong in Nature Communications
    Article Open access 06 November 2023
  16. Protein citrullination and NET formation do not contribute to the pathology of A20/TNFAIP3 mutant mice

    A20 serves as a critical brake on NF-κB-dependent inflammation. In humans, polymorphisms in or near the TNFAIP3/A20 gene have been linked to various...

    Karel F. A. Van Damme, Pieter Hertens, ... Geert van Loo in Scientific Reports
    Article Open access 21 October 2023
  17. Quantitative analysis of prion disease using an AI-powered digital pathology framework

    Prion disease is a fatal neurodegenerative disorder characterized by accumulation of an abnormal prion protein (PrPSc) in the central nervous system....

    Massimo Salvi, Filippo Molinari, ... Daniele Imperiale in Scientific Reports
    Article Open access 18 October 2023
  18. Association of triglyceride glucose-body mass index with Alzheimer’s disease pathology, cognition and brain structure in non-demented people

    The relationship between the triglyceride glucose-body mass index (TyG-BMI) index and Alzheimer’s disease (AD) pathology, cognition, and brain...

    Zihao Zhang, **n Chen, Zehu Sheng in Scientific Reports
    Article Open access 12 July 2024
  19. Critical evaluation of artificial intelligence as a digital twin of pathologists for prostate cancer pathology

    Prostate cancer pathology plays a crucial role in clinical management but is time-consuming. Artificial intelligence (AI) shows promise in detecting...

    Okyaz Eminaga, Mahmoud Abbas, ... Olaf Bettendorf in Scientific Reports
    Article Open access 04 March 2024
  20. Disease pathology signatures in a mouse model of Mucopolysaccharidosis type IIIB

    Mucopolysaccharidosis type IIIB (MPS IIIB) is a rare and devastating childhood-onset lysosomal storage disease caused by complete loss of function of...

    Ralitsa Petrova, Abhijeet R. Patil, ... Jennifer R. Stratton in Scientific Reports
    Article Open access 04 October 2023
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