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Functional annotation and comparative genomics analysis of Balamuthia mandrillaris reveals potential virulence-related genes
Balamuthia mandrillaris is a pathogenic protozoan that causes a rare but almost always fatal infection of the central nervous system and, in some...
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Bee-safe peptidomimetic acaricides achieved by comparative genomics
The devastating Varroa mite ( Varroa destructor Anderson and Trueman) is an obligatory ectoparasite of the honey bee, contributing to significant...
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Combined comparative genomics and clinical modeling reveals plasmid-encoded genes are independently associated with Klebsiella infection
Members of the Klebsiella pneumoniae species complex frequently colonize the gut and colonization is associated with subsequent infection. To...
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Genomic characteristics and comparative genomics analysis of Salmonella enterica subsp. enterica serovar Thompson isolated from an outbreak in South Korea
Salmonella infections represent an important public health problem. In 2018, a multistate outbreak of S. enterica subsp. enterica serovar Thompson...
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Detection of hidden antibiotic resistance through real-time genomics
Real-time genomics through nanopore sequencing holds the promise of fast antibiotic resistance prediction directly in the clinical setting. However,...
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Comparative genomics reveals a unique nitrogen-carbon balance system in Asteraceae
The Asteraceae (daisy family) is one of the largest families of plants. The genetic basis for its high biodiversity and excellent adaptability has...
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Comparative genomics of Giardia duodenalis sub-assemblage AI beaver (Be-2) and human (WB-C6) strains show remarkable homozygosity, sequence similarity, and conservation of VSP genes
Giardia duodenalis , a major cause of waterborne infection, infects a wide range of mammalian hosts and is subdivided into eight genetically...
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Comparative chloroplast genomics, phylogenetic relationships and molecular markers development of Aglaonema commutatum and seven green cultivars of Aglaonema
Aglaonema commutatum is a famous species in the Aglaonema genus, which has important ornamental and economic value. However, its chloroplast genome...
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Comparative genomics reveals evolutionary loss of epiplakin in cetaceans
The adaptation of vertebrates to different environments was associated with changes in the molecular composition and regulation of epithelia. Whales...
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Comparative genomics of monotremes provides insights into the early evolution of mammalian epidermal differentiation genes
The function of the skin as a barrier against the environment depends on the differentiation of epidermal keratinocytes into highly resilient...
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Comparative genomics and genome-wide SNPs of endangered Eld’s deer provide breeder selection for inbreeding avoidance
Eld’s deer, a conserved wildlife species of Thailand, is facing inbreeding depression, particularly in the captive Siamese Eld’s deer (SED)...
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A chromosome-scale assembly of the early-flowering Prunus campanulata and comparative genomics of cherries
Prunus campanulata is an important flowering cherry germplasm of high ornamental value. Given its early-flowering phenotypes, P. campanulata could be...
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Comparative genomics of infective Saccharomyces cerevisiae strains reveals their food origin
Fungal infections are less studied than viral or bacterial infections and often more difficult to treat. Saccharomyces cerevisiae is usually...
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Slide-tags enables single-nucleus barcoding for multimodal spatial genomics
Recent technological innovations have enabled the high-throughput quantification of gene expression and epigenetic regulation within individual...
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Systematic tissue annotations of genomics samples by modeling unstructured metadata
There are currently >1.3 million human –omics samples that are publicly available. This valuable resource remains acutely underused because...
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Hybrid de novo genome assembly and comparative genomics of three different isolates of Gnomoniopsis castaneae
The first genome assemblies of Gnomoniopsis castaneae (syn. G. smithogilvyi ), the causal agent of chestnut brown rot of kernels, shoot blight and...
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Isolation, characterization and comparative genomics of potentially probiotic Lactiplantibacillus plantarum strains from Indian foods
Lactiplantibacillus plantarum is one of the most diverse species of lactic acid bacteria found in various habitats. The aim of this work was to...
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Comparative genomics and proteomics analysis of phages infecting multi-drug resistant Escherichia coli O177 isolated from cattle faeces
The increasing prevalence of antimicrobial-resistant (AMR) pathogens has become a major global health concern. To address this challenge, innovative...
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Comparative plastome genomics, taxonomic delimitation and evolutionary divergences of Tetraena hamiensis var. qatarensis and Tetraena simplex (Zygophyllaceae)
The Zygophyllum and Tetraena genera are intriguingly important ecologically and medicinally. Based on morphological characteristics, T. hamiensis ...
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Genomics to select treatment for patients with metastatic breast cancer
Cancer progression is driven in part by genomic alterations
1 . The genomic characterization of cancers has shown interpatient heterogeneity regarding...