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  1. Regression-based Deep-Learning predicts molecular biomarkers from pathology slides

    Deep Learning (DL) can predict biomarkers from cancer histopathology. Several clinically approved applications use this technology. Most approaches,...

    Omar S. M. El Nahhas, Chiara M. L. Loeffler, ... Jakob Nikolas Kather in Nature Communications
    Article Open access 10 February 2024
  2. Restricting datasets to classifiable samples augments discovery of immune disease biomarkers

    Immunological diseases are typically heterogeneous in clinical presentation, severity and response to therapy. Biomarkers of immune diseases often...

    Gunther Glehr, Paloma Riquelme, ... James A. Hutchinson in Nature Communications
    Article Open access 26 June 2024
  3. Disease specific urinary biomarkers in the central nervous system

    Urinary biomarkers can diagnose and monitor pathophysiologic conditions in the central nervous system (CNS). However, focus is often on single...

    Micah Duggins-Warf, Aram Ghalali, ... Edward R. Smith in Scientific Reports
    Article Open access 07 November 2023
  4. Neuroimaging and fluid biomarkers in Parkinson’s disease in an era of targeted interventions

    A major challenge in Parkinson’s disease is the variability in symptoms and rates of progression, underpinned by heterogeneity of pathological...

    Angeliki Zarkali, George E. C. Thomas, ... Rimona S. Weil in Nature Communications
    Article Open access 05 July 2024
  5. A comprehensive database of exosome molecular biomarkers and disease-gene associations

    Exosomes play a crucial role in intercellular communication and can be used as biomarkers for diagnostic and therapeutic clinical applications....

    Yue Qi, Rongji Xu, ... Peng Wang in Scientific Data
    Article Open access 15 February 2024
  6. Cerebrospinal fluid reference proteins increase accuracy and interpretability of biomarkers for brain diseases

    Cerebrospinal fluid (CSF) biomarkers reflect brain pathophysiology and are used extensively in translational research as well as in clinical practice...

    Linda Karlsson, Jacob Vogel, ... Oskar Hansson in Nature Communications
    Article Open access 01 May 2024
  7. Analysis and identification of oxidative stress-ferroptosis related biomarkers in ischemic stroke

    Studies have shown that a series of molecular events caused by oxidative stress is associated with ferroptosis and oxidation after ischemic stroke...

    Lin-Ming Zhang, **ng-ling Liang, ... Ming-wei Liu in Scientific Reports
    Article Open access 15 February 2024
  8. Plasma biomarkers predict Alzheimer’s disease before clinical onset in Chinese cohorts

    Plasma amyloid-β (Aβ)42, phosphorylated tau (p-tau)181, and neurofilament light chain (NfL) are promising biomarkers of Alzheimer’s disease (AD)....

    Huimin Cai, Yana Pang, ... Longfei Jia in Nature Communications
    Article Open access 24 October 2023
  9. Revealing novel biomarkers for diagnosing chronic kidney disease in pediatric patients

    Pediatric chronic kidney disease (CKD) is a clinical condition characterized by progressive renal function deterioration. CKD diagnosis is based on...

    Sandra Benito, Nora Unceta, ... Ramón J. Barrio in Scientific Reports
    Article Open access 21 May 2024
  10. Evaluation of endothelial glycocalyx injury biomarkers in feline hemotropic mycoplasmosis

    The present study aimed to investigate endothelial glycocalyx (eGCx) damage in cats with feline hemotropic mycoplasmosis caused by Mycoplasma...

    Merve Ider, Ceylan Ceylan, ... Merve Cansu Kilickaya in Scientific Reports
    Article Open access 05 June 2024
  11. Predicting early Alzheimer’s with blood biomarkers and clinical features

    Alzheimer’s disease (AD) is an incurable neurodegenerative disorder that leads to dementia. This study employs explainable machine learning models to...

    Muaath Ebrahim AlMansoori, Sherlyn Jemimah, ... Aamna AlShehhi in Scientific Reports
    Article Open access 13 March 2024
  12. Exploratory risk prediction of type II diabetes with isolation forests and novel biomarkers

    Type II diabetes mellitus (T2DM) is a rising global health burden due to its rapidly increasing prevalence worldwide, and can result in serious...

    Hibba Yousef, Samuel F. Feng, Herbert F. Jelinek in Scientific Reports
    Article Open access 22 June 2024
  13. Biomarkers of UVB radiation-related senescent fibroblasts

    Excessive exposure to ultraviolet (UV) light is known to induce photoaging in the skin, necessitating the development of effective anti-photoaging...

    Mingyue Qiang, Zijia Dai in Scientific Reports
    Article Open access 09 January 2024
  14. Cox proportional hazards regression in small studies of predictive biomarkers

    Predictive biomarkers are essential for personalized medicine since they select the best treatment for a specific patient. However, of all biomarkers...

    K. Jóźwiak, V. H. Nguyen, ... M. Hauptmann in Scientific Reports
    Article Open access 20 June 2024
  15. Machine Learning-Enhanced Extraction of Biomarkers for High-Grade Serous Ovarian Cancer from Proteomics Data

    Comprehensive biomedical proteomic datasets are accumulating exponentially, warranting robust analytics to deconvolute them for identifying novel...

    Senuri De Silva, Asfa Alli-Shaik, Jayantha Gunaratne in Scientific Data
    Article Open access 25 June 2024
  16. Identifying potential biomarkers of idiopathic pulmonary fibrosis through machine learning analysis

    Idiopathic pulmonary fibrosis (IPF) is the most common and serious type of idiopathic interstitial pneumonia, characterized by chronic, progressive,...

    Zenan Wu, Huan Chen, ... Liangji Liu in Scientific Reports
    Article Open access 02 October 2023
  17. Inflammatory biomarkers at different stages of Sarcopenia in older women

    In recent years, studies have found that Sarcopenia alters inflammatory biomarkers. However, the behavior of inflammatory biomarkers at different...

    Leonardo Augusto da Costa Teixeira, Nubia Carelli Pereira Avelar, ... Ana Cristina Rodrigues Lacerda in Scientific Reports
    Article Open access 26 June 2023
  18. Proteomic analysis of serum extracellular vesicles from biliary tract infection patients to identify novel biomarkers

    Biliary tract infection (BTI), a commonly occurring abdominal disease, despite being extensively studied for its initiation and underlying...

    Chih-Jung Chang, Yung-Ning Huang, ... Yu-Chieh Weng in Scientific Reports
    Article Open access 08 March 2024
  19. Circulating microRNAs from plasma as preclinical biomarkers of epileptogenesis and epilepsy

    Epilepsy frequently develops as a result of brain insult; however, there are no tools allowing to predict which patients suffering from trauma will...

    Kinga Szydlowska, Anna Bot, ... Katarzyna Lukasiuk in Scientific Reports
    Article Open access 06 January 2024
  20. Data-driven identification of predictive risk biomarkers for subgroups of osteoarthritis using interpretable machine learning

    Osteoarthritis (OA) is increasing in prevalence and has a severe impact on patients’ lives. However, our understanding of biomarkers driving OA risk...

    Rikke Linnemann Nielsen, Thomas Monfeuga, ... Ramneek Gupta in Nature Communications
    Article Open access 01 April 2024
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