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  1. Recombinant Chymotrypsin-like Peptidase from Tenebrio molitor with a Non-Canonical Substrate-Binding Site

    Abstract

    We characterized an alkaline chymotrypsin-like serine peptidase from the yellow mealworm Te-nebrio molitor with a non-canonical...

    V. F. Tereshchenkova, N. I. Zhiganov, ... E. N. Elpidina in Applied Biochemistry and Microbiology
    Article 16 May 2024
  2. Substrate binding and inhibition of the anion exchanger 1 transporter

    Anion exchanger 1 (AE1), a member of the solute carrier (SLC) family, is the primary bicarbonate transporter in erythrocytes, regulating pH levels...

    Michael J. Capper, Shifan Yang, ... Daniel Wacker in Nature Structural & Molecular Biology
    Article 07 September 2023
  3. Investigating the effect of substrate binding on the catalytic activity of xylanase

    Abstract

    XynAF1 from Aspergillus fumigatus Z5 is an efficient thermophilic xylanase belonging to glycoside hydrolase family 10 (GH10). The...

    Lei Ma, Guangqi Li, ... Ruifu Zhang in Applied Microbiology and Biotechnology
    Article 16 September 2023
  4. Optimizing the binding of OGT and a peptidic substrate towards pseudo-substrate inhibitors via molecular dynamic simulations

    Elevated O -GlcNAcylation has been shown to be closely correlated with the occurrence and development of cancer, and inhibiting O -GlcNAc transferase...

    **nfang Qin, Jie Shi, ... Cheng Lu in Systems Microbiology and Biomanufacturing
    Article 24 March 2023
  5. The substrate and inhibitor binding mechanism of polyspecific transporter OAT1 revealed by high-resolution cryo-EM

    Organic anion transporters (OATs) of the SLC22 family have crucial roles in the transport of organic anions, including metabolites and therapeutic...

    Tongyi Dou, Tengfei Lian, ... Jiansen Jiang in Nature Structural & Molecular Biology
    Article 16 October 2023
  6. Structural perturbations of substrate binding and oxidation state changes in a lytic polysaccharide monooxygenase

    LPMOs are enzymes which catalyse the oxidation of a C-H bond within polysaccharides, leading to their oxidative cleavage. To achieve this, LPMOs...

    Paul H. Walton, Gideon J. Davies in JBIC Journal of Biological Inorganic Chemistry
    Article Open access 08 October 2022
  7. Polymorphism on human aromatase affects protein dynamics and substrate binding: spectroscopic evidence

    Human aromatase is a member of the cytochrome P450 superfamily, involved in steroid hormones biosynthesis. In particular, it converts androgen into...

    Giovanna Di Nardo, Almerinda Di Venere, ... Giampiero Mei in Biology Direct
    Article Open access 26 April 2021
  8. Bioinformatic Analysis of Substrate Binding Sites in Decapod Brachyurin-C Collagenases

    Abstract

    Brachyurin-C is the only member of the chymotrypsin A family able to hydrolyze native collagen type I and it is found in decapods like crabs,...

    Article 01 January 2021
  9. Cyanide replaces substrate in obligate-ordered addition of nitric oxide to the non-heme mononuclear iron AvMDO active site

    Thiol dioxygenases are a subset of non-heme mononuclear iron oxygenases that catalyze the O 2 -dependent oxidation of thiol-bearing substrates to yield...

    Nicholas J. York, Molly M. Lockart, ... Brad S. Pierce in JBIC Journal of Biological Inorganic Chemistry
    Article 21 February 2023
  10. High-resolution structure of the amino acid transporter AdiC reveals insights into the role of water molecules and networks in oligomerization and substrate binding

    Background

    The L-arginine/agmatine transporter AdiC is part of the arginine-dependent extreme acid resistance system of the bacterium Escherichia coli ...

    Hüseyin Ilgü, Jean-Marc Jeckelmann, ... Dimitrios Fotiadis in BMC Biology
    Article Open access 30 August 2021
  11. Crystallographic Studies of Native and Mutant Orotidine 5′phosphate Decarboxylases

    This review aims to use the results of an approach combining crystallographic structure analysis with mutational studies as a framework for the...
    Ning Wu, Emil F. Pai in Orotidine Monophosphate Decarboxylase
    Chapter
  12. Site-Specified Conjugating Technology and Application

    Conjugation strategy is a very important consideration when designing antibody-drug conjugates (ADCs). Site-specified conjugation is the conjugation...
    Ying Shen, Baoying Shi, Shuqing Chen in Antibody-Drug Conjugates and Cellular Metabolic Dynamics
    Chapter 2023
  13. Substrate-binding destabilizes the hydrophobic cluster to relieve the autoinhibition of bacterial ubiquitin ligase IpaH9.8

    IpaH enzymes are bacterial E3 ligases targeting host proteins for ubiquitylation. Two autoinhibition modes of IpaH enzymes have been proposed based...

    Yuxin Ye, Yuxian **ong, Hao Huang in Communications Biology
    Article Open access 10 December 2020
  14. O-Acetylhomoserine Sulfhydrylase from Clostridioides difficile: Role of Tyrosine Residues in the Active Site

    Abstract

    O -acetylhomoserine sulfhydrylase is one of the key enzymes in biosynthesis of methionine in Clostridioides difficile . The mechanism of...

    Vitalia V. Kulikova, Svetlana V. Revtovich, ... Tatyana V. Demidkina in Biochemistry (Moscow)
    Article 18 May 2023
  15. Flexible active-site loops fine-tune substrate specificity of hyperthermophilic metallo-oxidases

    Hyperthermophilic (‘superheat-loving’) archaea found in high-temperature environments such as Pyrobaculum aerophilum contain multicopper oxidases...

    Vânia Brissos, Patrícia T. Borges, ... Lígia O. Martins in JBIC Journal of Biological Inorganic Chemistry
    Article Open access 16 January 2024
  16. A carboxy-terminal ubiquitylation site regulates androgen receptor activity

    Degradation of unliganded androgen receptor (AR) in prostate cancer cells can be prevented by proteasome inhibition, but this is associated with only...

    Seiji Arai, Yanfei Gao, ... Steven P. Balk in Communications Biology
    Article Open access 05 January 2024
  17. Defective internal allosteric network imparts dysfunctional ATP/substrate-binding cooperativity in oncogenic chimera of protein kinase A

    An aberrant fusion of the DNAJB1 and PRKACA genes generates a chimeric protein kinase (PKA-C DNAJB1 ) in which the J-domain of the heat shock protein...

    Cristina Olivieri, Caitlin Walker, ... Gianluigi Veglia in Communications Biology
    Article Open access 10 March 2021
  18. Insight into the Catalytic Mechanism of Orotidine 5′-phosphate Decarboxylase from Crystallography and Mutagenesis

    With a half-time of 78 million years at room temperature, the spontaneous decarboxylation of orotidine 5′-phosphate (OMP) is among the slowest...
    Chapter
  19. Antibody and antibody fragments site-specific conjugation using new Q-tag substrate of bacterial transglutaminase

    During the last few years Antibody-Drug Conjugates (ADCs) have become one of the most active and very promising therapeutic weapons. Lessons learned...

    Meddy El Alaoui, Eva Sivado, ... Said El Alaoui in Cell Death Discovery
    Article Open access 15 February 2024
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