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Caveats for Watermelon Whole Genome Sequencing
Watermelon is a highly important vegetable crop species worldwide, with its abundance of genetic resources aiding in identifying mechanisms and...
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Genome Rearrangement Analysis
Genome rearrangements are mutations that change the gene content of a genome or the arrangement of the genes on a genome. Several years of research...
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Genofunc: genome annotation and identification of genome features for automated pipelining analysis of virus whole genome sequences
BackgroundViral genomics and epidemiology have been increasingly important tools for analysing the spread of key pathogens affecting daily lives of...
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GAGE is a method for identification of plant species based on whole genome analysis and genome editing
Whole genomes of plants should be ideal databases for their species identification, but unfortunately there was no such method before this...
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Population structure and adaptability analysis of Schizothorax o’connori based on whole-genome resequencing
BackgroundSchizothorax o’connori is an endemic fish distributed in the upper and lower reaches of the Yarlung Zangbo River in China. It has...
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Genetic diversity analysis of macadamia germplasm in China based on whole-genome resequencing
Macadamia ( Macadamia integrifolia , and M. tetraphylla ) production has increased rapidly in China over the past two decades. However, our...
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Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences
Polyploidy or whole-genome duplication (WGD) is a major event that drastically reshapes genome architecture and is often assumed to be causally...
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Whole genome analysis for 163 gRNAs in Cas9-edited mice reveals minimal off-target activity
Genome editing with CRISPR-associated (Cas) proteins holds exceptional promise for “correcting” variants causing genetic disease. To realize this...
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Marine Pediococcus pentosaceus E3 Probiotic Properties, Whole-Genome Sequence Analysis, and Safety Assessment
Probiotics play a significant role in enhancing health, and they are well known for bacteriocins production. Evaluating probiotics’ whole-genome...
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The STROMICS genome study: deep whole-genome sequencing and analysis of 10K Chinese patients with ischemic stroke reveal complex genetic and phenotypic interplay
Ischemic stroke is a leading cause of global mortality and long-term disability. However, there is a paucity of whole-genome sequencing studies on...
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Unveiling the population genetic structure of Iranian horses breeds by whole-genome resequencing analysis
Preserving genetic diversity is pivotal for enhancing genetic improvement and facilitating adaptive responses to selection. This study focuses on...
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Whole-Genome Sequence and Pathogenicity Analysis of Providencia Heimbachae Causing Diarrhea in Weaned Piglets
Providencia heimbachae was previously identified in piglets with post-weaned diarrhea and associated with hindlimb paralysis. However, the pathogenic...
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Molecular characterization of recombinant LSDV isolates from 2022 outbreak in Indonesia through phylogenetic networks and whole-genome SNP-based analysis
Lumpy skin disease (LSD) is a transboundary viral disease of cattle and water buffaloes caused by the LSD virus, leading to high morbidity, low...
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Whole-genome analysis reveals distinct adaptation signatures to diverse environments in Chinese domestic pigs
BackgroundLong-term natural and artificial selection has resulted in many genetic footprints within the genomes of pig breeds across distinct...
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Analyzing somatic mutations by single-cell whole-genome sequencing
Somatic mutations are the cause of cancer and have been implicated in other, noncancerous diseases and aging. While clonally expanded mutations can...
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Whole-genome sequencing in medicinal plants: current progress and prospect
Advancements in genomics have dramatically accelerated the research on medicinal plants, and the development of herbgenomics has promoted the...
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A pipeline for sample tagging of whole genome bisulfite sequencing data using genotypes of whole genome sequencing
BackgroundIn large-scale high-throughput sequencing projects and biobank construction, sample tagging is essential to prevent sample mix-ups. Despite...
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Whole genome evaluation analysis and preliminary Assembly of Oratosquilla oratoria (Stomatopoda: Squillidae)
BackgroundAs the dominant species of Stomatopoda, Oratosquilla oratoria has not been fully cultivated artificially, and the fishery production...
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Whole genome analysis of Pseudomonas mandelii SW-3 and the insights into low-temperature adaptation
Pseudomonas mandelii SW-3, isolated from the Napahai plateau wetland, can survive in cold environments. The mechanisms underlying the survival of...
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Bioherbicidal potential of Bacillus altitudinis D30202 on Avena fatua L.: a whole-genome sequencing analysis
Avena fatua L. (wild oat) is one of the most harmful gramineous weeds that can affect the yield and quality of infiltrating crops. Bacillus altitudinis ...
