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  1. Discovery of NSD2 non-histone substrates and design of a super-substrate

    The human protein lysine methyltransferase NSD2 catalyzes dimethylation at H3K36. It has very important roles in development and disease but many...

    Sara Weirich, Denis Kusevic, ... Albert Jeltsch in Communications Biology
    Article Open access 08 June 2024
  2. Probing Substrate-Loaded Carrier Proteins by Nuclear Magnetic Resonance

    Carrier proteins (CPs) are central actors in nonribosomal peptide synthetases (NRPSs) as they interact with all catalytic domains, and because they...
    Neeru Arya, Kenneth A. Marincin, Dominique P. Frueh in Non-Ribosomal Peptide Biosynthesis and Engineering
    Protocol 2023
  3. Map** the determinants of catalysis and substrate specificity of the antibiotic resistance enzyme CTX-M β-lactamase

    CTX-M β-lactamases are prevalent antibiotic resistance enzymes and are notable for their ability to rapidly hydrolyze the extended-spectrum...

    Allison Judge, Liya Hu, ... Timothy Palzkill in Communications Biology
    Article Open access 12 January 2023
  4. Organic matter decomposition in mountain peatlands: effects of substrate quality and peatland degradation

    Background and Aims

    Peatlands occupy only 3% of Earth’s terrestrial lands but store about one-third of global soil carbon. However, these large carbon...

    Charuni Jayasekara, Catherine Leigh, ... Samantha Grover in Plant and Soil
    Article Open access 08 May 2024
  5. Dynamic molecular architecture and substrate recruitment of cullin3–RING E3 ligase CRL3KBTBD2

    Phosphatidylinositol 3-kinase α, a heterodimer of catalytic p110α and one of five regulatory subunits, mediates insulin- and insulin like growth...

    Yuxia Hu, Zhao Zhang, ... Lei Sun in Nature Structural & Molecular Biology
    Article 08 February 2024
  6. Characterization of Prolyl-4-Hydroxylase Substrate Specificity Using Pichia pastoris as an Efficient Eukaryotic Expression System

    The use of eukaryotic expression systems facilitates the heterologous expression of complex eukaryotic proteins in their post-translationally...
    Gerith Elsäßer, Tim Seidl, ... Nils Stührwohldt in Plant Peptide Hormones and Growth Factors
    Protocol 2024
  7. Transesterification with CE15 glucuronoyl esterase from Cerrena unicolor reveals substrate preferences

    Purpose

    Glucuronoyl esterases (GE, family CE15) catalyse the cleavage of ester linkages in lignin-carbohydrate complexes (LCCs), and this study...

    Valentina Perna, Jane Wittrup Agger in Biotechnology Letters
    Article Open access 27 December 2023
  8. Rational engineering of an elevator-type metal transporter ZIP8 reveals a conditional selectivity filter critically involved in determining substrate specificity

    Engineering of transporters to alter substrate specificity as desired holds great potential for applications, including metabolic engineering....

    Yuhan Jiang, Zhen Li, ... Jian Hu in Communications Biology
    Article Open access 26 July 2023
  9. CAND1 inhibits Cullin-2-RING ubiquitin ligases for enhanced substrate specificity

    Through targeting essential cellular regulators for ubiquitination and serving as a major platform for discovering proteolysis-targeting chimera...

    Kankan Wang, Stephanie Diaz, ... **ng Liu in Nature Structural & Molecular Biology
    Article 04 January 2024
  10. Broad Spectrum Amino Acid Racemases (Bsrs): A Potential Target in Microbial Research

    Broad spectrum amino acid racemases (Bsrs) aid bacteria in producing non-canonical D-amino acids (NCDAA), which play significant functions in the...
    Chapter 2023
  11. Mechanisms of substrate processing during ER-associated protein degradation

    Maintaining proteome integrity is essential for long-term viability of all organisms and is overseen by intrinsic quality control mechanisms. The...

    John C. Christianson, Ernst Jarosch, Thomas Sommer in Nature Reviews Molecular Cell Biology
    Article 01 August 2023
  12. Cooperation of N- and C-terminal substrate transmembrane domain segments in intramembrane proteolysis by γ-secretase

    Intramembrane proteases play a pivotal role in biology and medicine, but how these proteases decode cleavability of a substrate transmembrane (TM)...

    Nadine T. Werner, Philipp Högel, ... Dieter Langosch in Communications Biology
    Article Open access 15 February 2023
  13. Synthesis and application of a phenazine class substrate for high-throughput screening of laccase activity

    Biocatalysis is one of the greatest tools for implementing the 12 principles of Green chemistry. Biocatalysts are bio-based, highly efficient and...

    Justinas Babinskas, Jerica Sabotič, Inga Matijošytė in Applied Microbiology and Biotechnology
    Article Open access 09 January 2024
  14. SALL4 is a CRL3REN/KCTD11 substrate that drives Sonic Hedgehog-dependent medulloblastoma

    The Sonic Hedgehog (SHH) pathway is crucial regulator of embryonic development and stemness. Its alteration leads to medulloblastoma (MB), the most...

    Ludovica Lospinoso Severini, Elena Loricchio, ... Lucia Di Marcotullio in Cell Death & Differentiation
    Article Open access 07 December 2023
  15. Methanol as a co-substrate with CO2 enhances butyrate production in microbial electrosynthesis

    Abstract

    Methanol is a promising feedstock for the bio-based economy as it can be derived from organic waste streams or produced electrochemically...

    Hui Yao, Johanna M. Rinta-Kanto, ... Marika Kokko in Applied Microbiology and Biotechnology
    Article Open access 14 June 2024
  16. Use of Ozone as a Substrate Treatment for the Control of Trichoderma in the Production of Pleurotus ostreatus

    Pleurotus ostreatus is one of the most widely cultivated species in the world. It can be produced in many lignocellulosic substrates after carrying...

    Santiago Jaramillo Mejía, María B. Colavolpe, ... Edgardo Albertó in Current Microbiology
    Article 18 May 2024
  17. Substrate-borne vibrations produced during the interaction with natural enemies alter aphids probing behavior

    The “ecology of fear”, i.e., physiological and behavioral alterations displayed by pests in response to predation risk, has recently been proposed as...

    Caterina Zippari, Rachele Nieri, ... Daniele Cornara in Journal of Pest Science
    Article Open access 30 March 2024
  18. Spectrum of Biological Activity of Extracts from Cultures of Distinct Isolates of Bipolaris sorokiniana Produced on Different Media

    Abstract —Bipolaris sorokiniana is circumglobally widespread root and leaf pathogen of cereals and grasses. It can grow both endo- and epiphytically...

    A. O. Berestetskiy, E. N. Grigoryeva, ... E. A. Stepanycheva in Biology Bulletin Reviews
    Article 23 December 2023
  19. Cryo-EM structure of GABA transporter 1 reveals substrate recognition and transport mechanism

    The inhibitory neurotransmitter γ-aminobutyric acid (GABA) is cleared from the synaptic cleft by the sodium- and chloride-coupled GABA transporter...

    Smruti Ranjan Nayak, Deepthi Joseph, ... Aravind Penmatsa in Nature Structural & Molecular Biology
    Article Open access 03 July 2023
  20. Targeting papain-like protease for broad-spectrum coronavirus inhibition

    The emergence of SARS-CoV-2 variants of concern and repeated outbreaks of coronavirus epidemics in the past two decades emphasize the need for...

    Shuofeng Yuan, **aopan Gao, ... Kwok-Yung Yuen in Protein & Cell
    Article Open access 06 April 2022
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