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Full Shotgun DNA Metagenomics
Full DNA metagenomics is the sequencing of all DNA from a sample followed by assembly and annotation and assignment of sequence information to...
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Shotgun Metagenomics Reveals Taxonomic and Functional Patterns of the Microbiome Associated with Barbour’s Seahorse (Hippocampus barbouri)
This study aimed to investigate the taxonomic and functional patterns of the microbiome associated with Barbour’s seahorse ( Hippocampus barbouri )...
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Metagenomics Analysis of Sourdough Microbiota
The sourdough fermentation process is conducted by more than 50 bacterial genera, mostly homo and hetero-fermentative. In addition, over 35 yeasts...
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Unveiling the microbial diversity and functional dynamics of Shiv Kund, Sohna hot spring, India through a shotgun metagenomics approach
In this research, we examined the microbial diversity in Sohna hot spring, Haryana, India using shotgun metagenome sequencing based on the Illumina...
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Metagenomics Insight into the Mycobiome Analysis
The mycobiome, a subset of the microbiome focusing on fungal communities, encompasses a vast yet largely unidentified array of fungal species....
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Shotgun metagenomics and computational profiling of the plastisphere microbiome: unveiling the potential of enzymatic production and plastic degradation
Plastic pollution is one of the most resilient types of pollution and is considered a global environmental threat, particularly in the marine...
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Metagenomics Databases for Bacteria
The booming sequencing technologies have turned metagenomics into a widely used tool for microbe-related studies, especially in the areas of clinical...
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Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect bacteria
BackgroundOxford Nanopore Technologies (ONT) offers an accessible platform for long-read sequencing, which improves the reconstruction of genomes and...
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Microbial Metagenomics Developments for Environmental and Public Health Monitoring
Microbial metagenomics has transformed surveillance in the fields of community health and the environment by providing previously unobtainable...
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UMGAP: the Unipept MetaGenomics Analysis Pipeline
BackgroundShotgun metagenomics yields ever richer and larger data volumes on the complex communities living in diverse environments. Extracting deep...
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Capturing the microbial dark matter in desert soils using culturomics-based metagenomics and high-resolution analysis
Deserts occupy one-third of the Earth’s terrestrial surface and represent a potentially significant reservoir of microbial biodiversity, yet the...
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Metagenomics Bioinformatic Pipeline
Microbial communities’ taxonomic and functional diversity has been broadly studied since sequencing technologies enabled faster and cheaper data...
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Host DNA Depletion in Saliva Samples for Improved Shotgun Metagenomics
Host DNA makes up the majority of DNA in a saliva sample. Therefore, shotgun metagenomics can be an inefficient way to evaluate the microbial...
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Metagenomics in the Census of Microbial Diversity
Metagenomics, a powerful tool in the realm of microbial ecology, facilitates the analysis of genetic material directly obtained from environmental...
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Quality Control in Metagenomics Data
Experiments involving metagenomics data are become increasingly commonplace. Processing such data requires a unique set of considerations. Quality...
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Metagenomics and metabarcoding experimental choices and their impact on microbial community characterization in freshwater recirculating aquaculture systems
BackgroundMicrobial communities in recirculating aquaculture systems (RAS) play a role in system success, nutrient cycling, and water quality....
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Next Generation Sequencing in Metagenomics and Metatranscriptomics
This study explores metagenomics and metatranscriptomics, delving into the intricacies of understanding complex microbial communities through...
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Vollständige Shotgun-DNA-Metagenomik
Die vollständige DNA-Metagenomik ist die Sequenzierung aller DNA aus einer Probe, gefolgt von Zusammenfügen und Annotation sowie Zuordnung von...
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From Genomics to Metagenomics in the Era of Recent Sequencing Technologies
Metagenomics, also known as environmental genomics, is the study of the genomic content of a sample of organisms obtained from a common habitat....
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City-scale monitoring of antibiotic resistance genes by digital PCR and metagenomics
BackgroundAnthropogenic activities significantly contribute to the dissemination of antibiotic resistance genes (ARGs), posing a substantial threat...
