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  1. Extracting cancer concepts from clinical notes using natural language processing: a systematic review

    Background

    Extracting information from free texts using natural language processing (NLP) can save time and reduce the hassle of manually extracting...

    Maryam Gholipour, Reza Khajouei, ... Leila Ahmadian in BMC Bioinformatics
    Article Open access 29 October 2023
  2. Natural Language Processing for Drug Discovery Knowledge Graphs: Promises and Pitfalls

    Building and analyzing knowledge graphs (KGs) to aid drug discovery is a topical area of research. A salient feature of KGs is their ability to...
    J. Charles G. Jeynes, Tim James, Matthew Corney in High Performance Computing for Drug Discovery and Biomedicine
    Protocol 2024
  3. GPAD: a natural language processing-based application to extract the gene-disease association discovery information from OMIM

    Background

    Thousands of genes have been associated with different Mendelian conditions. One of the valuable sources to track these gene-disease...

    K. M. Tahsin Hassan Rahit, Vladimir Avramovic, ... Maja Tarailo-Graovac in BMC Bioinformatics
    Article Open access 27 February 2024
  4. Benchmarking for biomedical natural language processing tasks with a domain specific ALBERT

    Background

    The abundance of biomedical text data coupled with advances in natural language processing (NLP) is resulting in novel biomedical NLP...

    Usman Naseem, Adam G. Dunn, ... **man Kim in BMC Bioinformatics
    Article Open access 21 April 2022
  5. Speech prosody enhances the neural processing of syntax

    Human language relies on the correct processing of syntactic information, as it is essential for successful communication between speakers. As an...

    Giulio Degano, Peter W. Donhauser, ... Narly Golestani in Communications Biology
    Article Open access 20 June 2024
  6. HLA-SPREAD: a natural language processing based resource for curating HLA association from PubMed abstracts

    Extreme complexity in the Human Leukocyte Antigens (HLA) system and its nomenclature makes it difficult to interpret and integrate relevant...

    Dhwani Dholakia, Ankit Kalra, ... Mitali Mukerji in BMC Genomics
    Article Open access 07 January 2022
  7. Human α-glucosidase inhibition and phytochemical profile of natural and shinzuke treated olives: implications from the processing method

    Olive ( Olea europaea ) phytochemicals are associated with a reduced risk of type 2 diabetes. Table olives typically have higher phytochemical...

    Lina Yonekura, Haruka Hisada, Jittipon Intravichakul in Food Production, Processing and Nutrition
    Article Open access 05 July 2024
  8. Degraded and computer-generated speech processing in a bonobo

    The human auditory system is capable of processing human speech even in situations when it has been heavily degraded, such as during noise-vocoding,...

    Nicole J. Lahiff, Katie E. Slocombe, ... Simon W. Townsend in Animal Cognition
    Article Open access 20 May 2022
  9. PhyloSophos: a high-throughput scientific name map** algorithm augmented with explicit consideration of taxonomic science, and its application on natural product (NP) occurrence database processing

    Background

    The standardization of biological data using unique identifiers is vital for seamless data integration, comprehensive interpretation, and...

    Min Hyung Cho, Kwang-Hwi Cho, Kyoung Tai No in BMC Bioinformatics
    Article Open access 14 December 2023
  10. The Pattern of Natural Variability of Palynomorphological Features by the Example of Some Nierembergia and Bouchetia Species (Solanaceae) and Natural System of Biovariety

    Abstract

    By the example of morphological features of pollen of eight species of Nierembergia and two species of Bouchetia (Solanaceae family), the...

    A. E. Pozhidaev, V. V. Grigoryeva, A. N. Semyonov in Biology Bulletin Reviews
    Article 14 May 2024
  11. Comparative Determination of Natural Antibodies for the Assessment of the Cardiovascular System and the Level of Human Difficulty

    Abstract

    A comparative analysis of natural antibodies to β-endorphin, angiotensin, dopamine, serotonin, parameters of the cardiovascular system and...

    M. A. Myagkova, Z. V. Bobrova, ... S. N. Petrochenko in Doklady Biochemistry and Biophysics
    Article 01 April 2023
  12. Image-based recognition and processing system for monitoring water levels in an irrigation and drainage channel

    The water level provides critically important information for disaster mitigation and water resource management. Image-based recognition and...

    Wen-Cheng Liu, Chun-Kai Chung, Wei-Che Huang in Paddy and Water Environment
    Article 06 July 2023
  13. Assessing experienced tranquillity through natural language processing and landscape ecology measures

    Context

    Identifying tranquil areas is important for landscape planning and policy-making. Research demonstrated discrepancies between modelled...

    Flurina M. Wartmann, Olga Koblet, Ross S. Purves in Landscape Ecology
    Article Open access 27 January 2021
  14. Application of the Worldwide Bioclimatic Classification System to determine bioclimatic features and potential natural vegetation distribution in Van Chan district, Vietnam

    Bioclimatic classification is an effective approach to reflect and investigate the role of climate in determining the potential natural vegetation...

    Tam Minh Pham, Huan Cao Nguyen, ... Tuan Anh Pham in Tropical Ecology
    Article 16 May 2023
  15. Speech-induced suppression during natural dialogues

    When engaged in a conversation, one receives auditory information from the other’s speech but also from their own speech. However, this information...

    Joaquin E. Gonzalez, Nicolás Nieto, ... Juan E. Kamienkowski in Communications Biology
    Article Open access 08 March 2024
  16. CoQUAD: a COVID-19 question answering dataset system, facilitating research, benchmarking, and practice

    Background

    Due to the growing amount of COVID-19 research literature, medical experts, clinical scientists, and researchers frequently struggle to...

    Shaina Raza, Brian Schwartz, Laura C. Rosella in BMC Bioinformatics
    Article Open access 02 June 2022
  17. Natural Code of Subjective Experience

    The paper introduces mathematical encoding for subjective experience and meaning in natural cognition. The code is based on a quantum-theoretic qubit...

    Ilya A. Surov in Biosemiotics
    Article 18 May 2022
  18. Morphoanatomy and changes in antioxidant defense associated with the natural ventilation system of micropropagated Lippia dulcis plantlets

    Micropropagation is a plant tissue culture technique widely used for the production of medicinal plants. Lippia dulcis is an aromatic species that...

    Tainá Teixeira Rocha, Diene Xavier Araújo, ... José Eduardo Brasil Pereira Pinto in Plant Cell, Tissue and Organ Culture (PCTOC)
    Article 24 August 2022
  19. Optimization of metabolomic data processing using NOREVA

    A typical output of a metabolomic experiment is a peak table corresponding to the intensity of measured signals. Peak table processing, an essential...

    Jianbo Fu, Ying Zhang, ... Feng Zhu in Nature Protocols
    Article 24 December 2021
  20. Multiplicative processing in the modeling of cognitive activities in large neural networks

    Explaining the foundation of cognitive abilities in the processing of information by neural systems has been in the beginnings of biophysics since...

    Juan C. Valle-Lisboa, Andrés Pomi, Eduardo Mizraji in Biophysical Reviews
    Article Open access 22 June 2023
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