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  1. Next-Generation Sequencing: ForenSeq™ DNA Signature Prep Kit with the Illumina MiSeq FGx

    Sequencing forensic DNA samples that are amplified and prepared with the ForenSeq™ DNA Signature Prep Kit allows for the simultaneous targeting of...
    Megan M. Foley in Forensic DNA Analysis
    Protocol 2023
  2. A Cre-dependent massively parallel reporter assay allows for cell-type specific assessment of the functional effects of non-coding elements in vivo

    The function of regulatory elements is highly dependent on the cellular context, and thus for understanding the function of elements associated with...

    Tomas Lagunas Jr., Stephen P. Plassmeyer, ... Joseph D. Dougherty in Communications Biology
    Article Open access 13 November 2023
  3. Discovery of tumor-reactive T cell receptors by massively parallel library synthesis and screening

    T cell receptor (TCR) gene therapy is a potent form of cellular immunotherapy in which patient T cells are genetically engineered to express TCRs...

    Ziva Moravec, Yue Zhao, ... Wouter Scheper in Nature Biotechnology
    Article 23 April 2024
  4. DNA Sequencing Technologies and DNA Barcoding

    DNA barcodes are short, standardized DNA segments that geneticists can use to identify all living taxa. On the other hand, DNA barcoding identifies...
    Anisha David, J. Deepa Arul Priya, Akash Gautam in DNA Barcoding
    Protocol 2024
  5. Population genetic analyses of Eastern Chinese Han nationality using ForenSeq™ DNA Signature Prep Kit

    Currently, the most commonly used method for human identification and kinship analysis in forensic genetics is the detection of length polymorphism...

    Ruiyang Tao, **nyu Dong, ... Chengtao Li in Molecular Genetics and Genomics
    Article 20 February 2024
  6. Next-generation sequencing technology: a boon to agriculture

    Next-generation sequencing (NGS) is a massively parallel sequencing technology that has revolutionized genomic research. The goal of genomics is...

    Balakrishnan Marudamuthu, Tamanna Sharma, ... Ch. Srinivasa Rao in Genetic Resources and Crop Evolution
    Article 16 December 2022
  7. Characterization of 58 STRs and 94 SNPs with the ForenSeq™ DNA signature prep kit in Mexican-Mestizos from the Monterrey city (Northeast, Mexico)

    Background

    STR allele frequency databases from populations are necessary to take full advantage of the increased power of discrimination offered by...

    José Alonso Aguilar-Velázquez, Miguel Ángel Duran-Salazar, ... Héctor Rangel-Villalobos in Molecular Biology Reports
    Article 03 June 2022
  8. Massively parallel genomic perturbations with multi-target CRISPR interrogates Cas9 activity and DNA repair at endogenous sites

    Here we present an approach that combines a clustered regularly interspaced short palindromic repeats (CRISPR) system that simultaneously targets...

    Roger S. Zou, Alberto Marin-Gonzalez, ... Taekjip Ha in Nature Cell Biology
    Article Open access 05 September 2022
  9. Genome-Wide Expression Analysis of Genes Involved in Somatic Embryogenesis

    Genome-wide expression analysis is an important tool for identifying and analysing genes involved in various biological processes, including cell...
    W. Tang, R. J. Newton in Somatic Embryogenesis
    Chapter
  10. Massively parallel phenoty** of coding variants in cancer with Perturb-seq

    Genome sequencing studies have identified millions of somatic variants in cancer, but it remains challenging to predict the phenotypic impact of...

    Oana Ursu, James T. Neal, ... Jesse S. Boehm in Nature Biotechnology
    Article 20 January 2022
  11. Next-Generation Sequencing in Medicinal Plants: Recent Progress, Opportunities, and Challenges

    Medicinal plants have a significant role in human health care since the development of medicine. Plants that yield phytopharmaceuticals have produced...

    Deeksha Singh, Shivangi Mathur, ... Rajiv Ranjan in Journal of Plant Growth Regulation
    Article 21 February 2024
  12. Massively parallel single-cell mitochondrial DNA genoty** and chromatin profiling

    Natural mitochondrial DNA (mtDNA) mutations enable the inference of clonal relationships among cells. mtDNA can be profiled along with measures of...

    Caleb A. Lareau, Leif S. Ludwig, ... Vijay G. Sankaran in Nature Biotechnology
    Article 12 August 2020
  13. Role of Next-Generation Sequencing (NGS) in Understanding the Microbial Diversity

    Microbes constitute a major part of earth’s biological diversity and act as a key player by playing an important role in our day-to-day life....
    Anamika Dubey, Muneer Ahmad Malla, Ashwani Kumar in Molecular Genetics and Genomics Tools in Biodiversity Conservation
    Chapter 2022
  14. RNA Sequencing (RNA-seq)

    RNA sequencing (or popularly known as RNA-seq) or whole transcriptome shortgun sequencing (WTSS) is a useful next-generation sequencing (NGS)...
    Protocol 2022
  15. Mitochondrial point heteroplasmy: insights from deep-sequencing of human replicate samples

    Background

    Human mitochondrial heteroplasmy is an extensively investigated phenomenon in the context of medical diagnostics, forensic identification...

    Marina Korolija, Viktorija Sukser, Kristian Vlahoviček in BMC Genomics
    Article Open access 10 January 2024
  16. Concordance study on Y-STRs ty** between SeqStudio™ genetic analyzer for HID and MiSeq™ FGx forensic genomics system

    Background

    Massively Parallel Sequencing (MPS) allowed an increased number of information to be retrieved from short tandem repeat (STR) analysis,...

    Giulia Soldati, Stefania Turrina, ... Domenico De Leo in Molecular Biology Reports
    Article Open access 09 October 2023
  17. Whole-Genome Sequencing of Plants: Past, Present, and Future

    Advances in analytical chemistry, as well as the constant introduction of novel analytical chemistry approaches, are altering genomics at a higher...
    Talambedu Usha, Prachurjya Panda, ... Sushil Kumar Middha in Plant Genomics for Sustainable Agriculture
    Chapter 2022
  18. Joint epigenome profiling reveals cell-type-specific gene regulatory programmes in human cortical organoids

    Gene expression is regulated by multiple epigenetic mechanisms, which are coordinated in development and disease. However, current multiomics methods...

    Florian Noack, Silvia Vangelisti, ... Boyan Bonev in Nature Cell Biology
    Article Open access 23 November 2023
  19. An anti-influenza combined therapy assessed by single cell RNA-sequencing

    Influenza makes millions of people ill every year, placing a large burden on the healthcare system and the economy. To develop a treatment against...

    Chiara Medaglia, Ilya Kolpakov, ... Caroline Tapparel in Communications Biology
    Article Open access 10 October 2022
  20. Ultra-high-throughput single-cell RNA sequencing and perturbation screening with combinatorial fluidic indexing

    Cell atlas projects and high-throughput perturbation screens require single-cell sequencing at a scale that is challenging with current technology....

    Paul Datlinger, André F. Rendeiro, ... Christoph Bock in Nature Methods
    Article 31 May 2021
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