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Geometry-based navigation in the dark: layout symmetry facilitates spatial learning in the house cricket, Acheta domesticus, in the absence of visual cues
The capacity to navigate by layout geometry has been widely recognized as a robust strategy of place-finding. It has been reported in various...
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A Review of Parallel Implementations for the Smith–Waterman Algorithm
AbstractThe rapid advances in sequencing technology have led to an explosion of sequence data. Sequence alignment is the central and fundamental...
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Algorithm for DNA sequence assembly by quantum annealing
BackgroundThe assembly task is an indispensable step in sequencing genomes of new organisms and studying structural genomic changes. In recent years,...
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FLOW-MAP: a graph-based, force-directed layout algorithm for trajectory map** in single-cell time course datasets
High-dimensional single-cell technologies present new opportunities for biological discovery, but the complex nature of the resulting datasets makes...
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Dynamic SARS-CoV-2 emergence algorithm for rationally-designed logical next-generation vaccines
SARS-CoV-2 worldwide spread and evolution has resulted in variants containing mutations resulting in immune evasive epitopes that decrease vaccine...
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Global Potato Production Forecasting Based on Time Series Analysis and Advanced Waterwheel Plant Optimization Algorithm
The cultivation of potatoes is one of the most important parts of the world’s agricultural system, so forecasting methods that can precisely predict...
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Detection for melanoma skin cancer through ACCF, BPPF, and CLF techniques with machine learning approach
Intense sun exposure is a major risk factor for the development of melanoma, an abnormal proliferation of skin cells. Yet, this more prevalent type...
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Metacell-2: a divide-and-conquer metacell algorithm for scalable scRNA-seq analysis
Scaling scRNA-seq to profile millions of cells is crucial for constructing high-resolution maps of transcriptional manifolds. Current analysis...
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Spatial optimization of genetic thinning in seed orchards
Key messageWe provide a mathematical model to determine which trees should be ruled out from the grid to promote random mating in seed orchards under...
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clusterMaker2: a major update to clusterMaker, a multi-algorithm clustering app for Cytoscape
BackgroundSince the initial publication of clusterMaker , the need for tools to analyze large biological datasets has only increased. New datasets...
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Simulating cable corridors based on terrestrial LiDAR data
This article introduces a new basis for optimising cable corridor layouts in timber extraction on steep terrain by using a digital twin of a forest....
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RegCloser: a robust regression approach to closing genome gaps
BackgroundClosing gaps in draft genomes leads to more complete and continuous genome assemblies. The ubiquitous genomic repeats are challenges to the...
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Evaluation of rapeseed flowering dynamics for different genotypes with UAV platform and machine learning algorithm
Rapeseed ( Brassica napus L.) is an important oil-bearing cash crop. Effective identification of the rapeseed flowering date is important for yield...
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Design of Humanitarian Logistics Network Using Imperialist Competitive Algorithm
Design of humanitarian logistics network is a major strategic task due to its significant influence on the performance and responsiveness of a relief... -
Driver Safety System for Agricultural Machinery Operations Using Deep Learning Algorithm
One of the most critical aspects of ensuring the safety of agricultural machinery drivers is the timely recognition and detection of dangerous... -
Enhanced production of alkane hydroxylase from Penicillium chrysogenum SNP5 (MTCC13144) through feed-forward neural network and genetic algorithm
Alkane hydroxylase (AlkB), a membrane-bound enzyme has high industrial demand; however, its economical production remains challenging due to its...
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Ensembles of Heuristics and Computational Optimisation in Highly Flexible Manufacturing System
The objective of a Flexible Manufacturing System (FMS) is to respond faster to changes in products and demands with minimum changeover cost. However,... -
Injectiondesign: web service of plate design with optimized stratified block randomization for modern GC/LC-MS-based sample preparation
BackgroundPlate design is a necessary and time-consuming operation for GC/LC-MS-based sample preparation. The implementation of the inter-batch...
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Small- and medium-sized rice fields identification in hilly areas using all available sentinel-1/2 images
BackgroundMastering the spatial distribution and planting area of paddy can provide a scientific basis for monitoring rice production, and planning...
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Optimized model architectures for deep learning on genomic data
The success of deep learning in various applications depends on task-specific architecture design choices, including the types, hyperparameters, and...