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Showing 1-20 of 3,344 results
  1. Geometry-based navigation in the dark: layout symmetry facilitates spatial learning in the house cricket, Acheta domesticus, in the absence of visual cues

    The capacity to navigate by layout geometry has been widely recognized as a robust strategy of place-finding. It has been reported in various...

    Bartosz Baran, Michał Krzyżowski, ... Mateusz Hohol in Animal Cognition
    Article Open access 11 November 2022
  2. A Review of Parallel Implementations for the Smith–Waterman Algorithm

    Abstract

    The rapid advances in sequencing technology have led to an explosion of sequence data. Sequence alignment is the central and fundamental...

    Zeyu **a, Yingbo Cui, ... **angke Liao in Interdisciplinary Sciences: Computational Life Sciences
    Article 06 September 2021
  3. Algorithm for DNA sequence assembly by quantum annealing

    Background

    The assembly task is an indispensable step in sequencing genomes of new organisms and studying structural genomic changes. In recent years,...

    Katarzyna Nałęcz-Charkiewicz, Robert M. Nowak in BMC Bioinformatics
    Article Open access 07 April 2022
  4. FLOW-MAP: a graph-based, force-directed layout algorithm for trajectory map** in single-cell time course datasets

    High-dimensional single-cell technologies present new opportunities for biological discovery, but the complex nature of the resulting datasets makes...

    Melissa E. Ko, Corey M. Williams, ... Eli R. Zunder in Nature Protocols
    Article 13 January 2020
  5. Dynamic SARS-CoV-2 emergence algorithm for rationally-designed logical next-generation vaccines

    SARS-CoV-2 worldwide spread and evolution has resulted in variants containing mutations resulting in immune evasive epitopes that decrease vaccine...

    David P. Maison, Lauren L. Ching, ... Vivek R. Nerurkar in Communications Biology
    Article Open access 10 October 2022
  6. Global Potato Production Forecasting Based on Time Series Analysis and Advanced Waterwheel Plant Optimization Algorithm

    The cultivation of potatoes is one of the most important parts of the world’s agricultural system, so forecasting methods that can precisely predict...

    Amel Ali Alhussan, Doaa Sami Khafaga, ... El-Sayed M. El-Kenawy in Potato Research
    Article 08 May 2024
  7. Detection for melanoma skin cancer through ACCF, BPPF, and CLF techniques with machine learning approach

    Intense sun exposure is a major risk factor for the development of melanoma, an abnormal proliferation of skin cells. Yet, this more prevalent type...

    P. Kavitha, G. Ayyappan, ... Ben Othman Soufiene in BMC Bioinformatics
    Article Open access 06 December 2023
  8. Metacell-2: a divide-and-conquer metacell algorithm for scalable scRNA-seq analysis

    Scaling scRNA-seq to profile millions of cells is crucial for constructing high-resolution maps of transcriptional manifolds. Current analysis...

    Oren Ben-Kiki, Akhiad Bercovich, ... Amos Tanay in Genome Biology
    Article Open access 19 April 2022
  9. Spatial optimization of genetic thinning in seed orchards

    Key message

    We provide a mathematical model to determine which trees should be ruled out from the grid to promote random mating in seed orchards under...

    Kateřina Chaloupková, Milan Lstibůrek in Annals of Forest Science
    Article Open access 01 September 2022
  10. clusterMaker2: a major update to clusterMaker, a multi-algorithm clustering app for Cytoscape

    Background

    Since the initial publication of clusterMaker , the need for tools to analyze large biological datasets has only increased. New datasets...

    Maija Utriainen, John H. Morris in BMC Bioinformatics
    Article Open access 05 April 2023
  11. Simulating cable corridors based on terrestrial LiDAR data

    This article introduces a new basis for optimising cable corridor layouts in timber extraction on steep terrain by using a digital twin of a forest....

    Carl O. Retzlaff, Christoph Gollob, ... Andreas Holzinger in European Journal of Forest Research
    Article Open access 26 March 2024
  12. RegCloser: a robust regression approach to closing genome gaps

    Background

    Closing gaps in draft genomes leads to more complete and continuous genome assemblies. The ubiquitous genomic repeats are challenges to the...

    Shenghao Cao, Mengtian Li, Lei M. Li in BMC Bioinformatics
    Article Open access 13 June 2023
  13. Evaluation of rapeseed flowering dynamics for different genotypes with UAV platform and machine learning algorithm

    Rapeseed ( Brassica napus L.) is an important oil-bearing cash crop. Effective identification of the rapeseed flowering date is important for yield...

    Ziwen **e, Song Chen, ... Yuntao Ma in Precision Agriculture
    Article 15 June 2022
  14. Design of Humanitarian Logistics Network Using Imperialist Competitive Algorithm

    Design of humanitarian logistics network is a major strategic task due to its significant influence on the performance and responsiveness of a relief...
    Ashish Kumar Kaushal, Vandna Devi in Climate Change and Urban Environment Sustainability
    Chapter 2023
  15. Driver Safety System for Agricultural Machinery Operations Using Deep Learning Algorithm

    One of the most critical aspects of ensuring the safety of agricultural machinery drivers is the timely recognition and detection of dangerous...
    Zhang Hengyi, Tofael Ahamed in IoT and AI in Agriculture
    Chapter 2024
  16. Enhanced production of alkane hydroxylase from Penicillium chrysogenum SNP5 (MTCC13144) through feed-forward neural network and genetic algorithm

    Alkane hydroxylase (AlkB), a membrane-bound enzyme has high industrial demand; however, its economical production remains challenging due to its...

    Satyapriy Das, Sangeeta Negi in AMB Express
    Article Open access 03 March 2022
  17. Ensembles of Heuristics and Computational Optimisation in Highly Flexible Manufacturing System

    The objective of a Flexible Manufacturing System (FMS) is to respond faster to changes in products and demands with minimum changeover cost. However,...
    Rotimi Ogunsakin, Nikolay Mehandjiev, Cesar Marin in Bio-inspired Information and Communications Technologies
    Conference paper 2023
  18. Injectiondesign: web service of plate design with optimized stratified block randomization for modern GC/LC-MS-based sample preparation

    Background

    Plate design is a necessary and time-consuming operation for GC/LC-MS-based sample preparation. The implementation of the inter-batch...

    Miaoshan Lu, Hengxuan Jiang, ... Changbin Yu in BMC Bioinformatics
    Article Open access 20 December 2023
  19. Small- and medium-sized rice fields identification in hilly areas using all available sentinel-1/2 images

    Background

    Mastering the spatial distribution and planting area of paddy can provide a scientific basis for monitoring rice production, and planning...

    Lihua Wang, Hao Ma, ... Yumiao Wang in Plant Methods
    Article Open access 04 February 2024
  20. Optimized model architectures for deep learning on genomic data

    The success of deep learning in various applications depends on task-specific architecture design choices, including the types, hyperparameters, and...

    Hüseyin Anil Gündüz, René Mreches, ... Martin Binder in Communications Biology
    Article Open access 30 April 2024
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