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‘Nebbiolo’ genome assembly allows surveying the occurrence and functional implications of genomic structural variations in grapevines (Vitis vinifera L.)
Background‘Nebbiolo’ is a grapevine cultivar typical of north-western Italy, appreciated for producing high-quality red wines. Grapevine cultivars...
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Genome surveying reveals the complete chloroplast genome and nuclear genomic features of the crocin-producing plant Gardenia jasminoides Ellis
Gardenia jasminoides , a well-known traditional Chinese herb, has been extensively utilized for its being as stable pigment in food industry and as...
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Surveying the global landscape of post-transcriptional regulators
Numerous proteins regulate gene expression by modulating mRNA translation and decay. To uncover the full scope of these post-transcriptional...
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Sequencing the Genome of Catharanthus roseus: Status and Prospects
Catharanthus roseus is a highly valuable plant often used for its medicinal applications. This plant synthesizes potent antitumor drugs known as...
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Genome-wide association analysis uncovers rice blast resistance alleles of Ptr and Pia
A critical step to maximize the usefulness of genome-wide association studies (GWAS) in plant breeding is the identification and validation of...
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Genome-wide profiling of prime editor off-target sites in vitro and in vivo using PE-tag
Prime editors have a broad range of potential research and clinical applications. However, methods to delineate their genome-wide editing activities...
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A spatial genome aligner for resolving chromatin architectures from multiplexed DNA FISH
Multiplexed fluorescence in situ hybridization (FISH) is a widely used approach for analyzing three-dimensional genome organization, but it is...
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Genome Resources for Ensete ventricosum (Enset) and Related Species
The most iconic crop plant of the Ehtiopian highlands is Ensete ventricosum (Welw.) Cheeseman, known colloquially in English as ‘Ensete’, ‘false...
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The slow-evolving Acorus tatarinowii genome sheds light on ancestral monocot evolution
Monocots are one of the most diverse groups of flowering plants, and tracing the evolution of their ancestral genome into modern species is essential...
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Beyond the factor indeterminacy problem using genome-wide association data
Latent factors, such as general intelligence, depression and risk tolerance, are invoked in nearly all social science research where a construct is...
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Dynamic changes in whole genome DNA methylation, chromatin and gene expression during mouse lens differentiation
BackgroundCellular differentiation is marked by temporally and spatially coordinated gene expression regulated at multiple levels. DNA methylation...
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The complete chloroplast genome of Onobrychis gaubae (Fabaceae-Papilionoideae): comparative analysis with related IR-lacking clade species
BackgroundPlastome (Plastid genome) sequences provide valuable markers for surveying evolutionary relationships and population genetics of plant...
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Genome-based analyses reveal heterotypic synonyms of Streptomyces species and associated subspecies
In the genus Streptomyces , several validly described species have been reduced to synonyms of earlier described species though additional synonyms...
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Genome-wide identification of 14-3-3 gene family and characterization of their expression in developmental stages of Solanum tuberosum under multiple biotic and abiotic stress conditions
GF14 proteins are a family of conserved proteins involved in many cellular processes including transport, growth, metabolism, and stress response....
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Start codon targeted (SCoT) polymorphism marker in plant genome analysis: current status and prospects
Main conclusionThe present review illustrates a comprehensive overview of the start codon targeted (SCoT) polymorphism marker and their utilization...
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Molecular characterization of the 3′ end of Citrus tristeza virus genome from Oman
Citrus aurantifolia (acid lime) trees exhibiting yellowing, stem pitting and decline symptoms in Oman were found to be infected by Citrus tristeza...
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Grain dispersal mechanism in cereals arose from a genome duplication followed by changes in spatial expression of genes involved in pollen development
Key messageGrain disarticulation in wild progenitor of wheat and barley evolved through a local duplication event followed by neo-functionalization...
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Development, Preparation, and Curation of High-Throughput Phenotypic Data for Genome-Wide Association Studies: A Sample Pipeline in R
Genome-wide association studies (GWAS) have benefited from the advances of sequencing methods for the generation of high-density genomic data. By...