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Species-specific responses of marine bacteria to environmental perturbation
Environmental perturbations shape the structure and function of microbial communities. Oil spills are a major perturbation and resolving spills often...
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Causal identification of single-cell experimental perturbation effects with CINEMA-OT
Recent advancements in single-cell technologies allow characterization of experimental perturbations at single-cell resolution. While methods have...
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Learning single-cell perturbation responses using neural optimal transport
Understanding and predicting molecular responses in single cells upon chemical, genetic or mechanical perturbations is a core question in biology....
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Network inference from perturbation time course data
Networks underlie much of biology from subcellular to ecological scales. Yet, understanding what experimental data are needed and how to use them for...
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Algal blooms as a reactive dynamic response to seasonal perturbation in an experimental system
Algal blooms are typical of many aquatic freshwater ecosystems in seasonal environments. Such blooms could derive from transient reactive dynamics of...
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Utilizing Large Functional and Population Genomics Resources for CRISPR/Cas Perturbation Experiment Design
Genome sequencing technologies have rapidly evolved in the past decades, enabling us to interpret the human genome through multiple perspectives,...
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Functional diversity increases the resistance of a tritrophic food web to environmental changes
In the light of global climate change and biodiversity loss, understanding the role of functional diversity in the response of food webs to...
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Maple samara flight is robust to morphological perturbation and united by a classic drag model
Winged, autorotating seeds from the genus Acer , have been the subject of study for botanists and aerodynamicists for decades. Despite this attention...
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The impacts of host association and perturbation on symbiont fitness
Symbiosis can benefit hosts in numerous ways, but less is known about whether interactions with hosts benefit symbionts—the smaller species in the...
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Pooled genetic perturbation screens with image-based phenotypes
Discovery of the genetic components underpinning fundamental and disease-related processes is being rapidly accelerated by combining efficient,...
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Novel yeast-based biosensor for environmental monitoring of tebuconazole
AbstractDue to increasing demand for high and stable crop production, human populations are highly dependent on pesticide use for growing and storing...
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Microbial assembly and co-occurrence network in an aquifer under press perturbation
PurposeThousands of aquifers worldwide have been polluted by leachate from landfills and many more remained threatened. Microbial communities from...
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Environmental Monitoring
In the United States, the regulatory authority that oversees current Good Manufacturing Practices (cGMP) and Good Tissue Practice (cGTP)...
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Microbes for Sustainable Development of Environmental Issues
The most hazardous environmental issues are the depleting soil quality, food insecurities, plastic waste, threat to marine life including flora and...
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Cyanobacterial blooms, iron, and environmental pollutants
Iron determines the abundance and diversity of life and controls primary production in numerous aqueous environments. Over the past decades, the...
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Proteomics-based evaluation of the mechanism underlying vascular injury via DNA interstrand crosslinks, glutathione perturbation, mitogen-activated protein kinase, and Wnt and ErbB signaling pathways induced by crotonaldehyde
Crotonaldehyde (CRA)—one of the major environmental pollutants from tobacco smoke and industrial pollution—is associated with vascular injury (VI)....
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Enrichment of microbial consortia for MEOR in crude oil phase of reservoir-produced liquid and their response to environmental disturbance
Develo** microbial consortiums is necessary for microbial enhanced oil recovery (MEOR) in heavy crude oil production. The aqueous phase of produced...
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Advances in Environmental Microbiology: A Multi-omic Perspective
In the last decade, significant progress has been made in research related to various metabolic phenomena in biological organisms, ranging from...
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High-throughput transcriptomics of 409 bacteria–drug pairs reveals drivers of gut microbiota perturbation
Many drugs can perturb the gut microbiome, potentially leading to negative health consequences. However, mechanisms of most microorganism–drug...
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