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  1. MFSynDCP: multi-source feature collaborative interactive learning for drug combination synergy prediction

    Drug combination therapy is generally more effective than monotherapy in the field of cancer treatment. However, screening for effective synergistic...

    Yunyun Dong, Yunqing Chang, ... **aoqiang Ren in BMC Bioinformatics
    Article Open access 01 April 2024
  2. Harmonizing across datasets to improve the transferability of drug combination prediction

    Combination treatment has multiple advantages over traditional monotherapy in clinics, thus becoming a target of interest for many high-throughput...

    Hanrui Zhang, Ziyan Wang, ... Yuanfang Guan in Communications Biology
    Article Open access 11 April 2023
  3. EDST: a decision stump based ensemble algorithm for synergistic drug combination prediction

    Introduction

    There are countless possibilities for drug combinations, which makes it expensive and time-consuming to rely solely on clinical trials to...

    **g Chen, Lianlian Wu, ... **aochen Bo in BMC Bioinformatics
    Article Open access 29 August 2023
  4. A network-based drug prioritization and combination analysis for the MEK5/ERK5 pathway in breast cancer

    Background

    Prioritizing candidate drugs based on genome-wide expression data is an emerging approach in systems pharmacology due to its holistic...

    Regan Odongo, Asuman Demiroglu-Zergeroglu, Tunahan Çakır in BioData Mining
    Article Open access 21 February 2024
  5. Dose–response prediction for in-vitro drug combination datasets: a probabilistic approach

    In this paper we propose PIICM, a probabilistic framework for dose–response prediction in high-throughput drug combination datasets. PIICM utilizes a...

    Leiv Rønneberg, Paul D. W. Kirk, Manuela Zucknick in BMC Bioinformatics
    Article Open access 21 April 2023
  6. Synergistic effect of a nonsteroidal anti-inflammatory drug in combination with topotecan on small cell lung cancer cells

    Background

    The topoisomerase I inhibitor topotecan (TPT) is used in the treatment of recurrent small cell lung cancer (SCLC). However, the drug has a...

    Sevinc Yanar, Aylin Kanli, ... Asuman Deveci Ozkan in Molecular Biology Reports
    Article 18 January 2024
  7. Drug-herb combination therapy in cancer management

    Cancer is the second leading cause of fatality all over the world. Various unwanted side effects are being reported with the use of conventional...

    Urvashi Langeh, Vishal Kumar, ... Arti Singh in Molecular Biology Reports
    Article 09 September 2022
  8. Treatment of Cancer Using Combination of Herbal and Novel Drug Delivery System

    Nanotechnology and nanoengineering tend to generate significant scientific and technological push on in diverse domain including medicine and...
    Chapter 2023
  9. Improving combination drug trials using ‘definitive screening designs’

    Michael Dodds, James Roberts, Brian Finrow in Nature Biotechnology
    Article 18 November 2022
  10. Investigating Combination Therapy as a Means to Enhance Activity and Repurpose Antimicrobials

    Current clinical practice assumes that a single antibiotic given as a bolus or as a course will successfully treat most infections. In modern...
    Robert J. H. Hammond in Antibiotic Resistance Protocols
    Protocol 2024
  11. SSF-DDI: a deep learning method utilizing drug sequence and substructure features for drug–drug interaction prediction

    Background

    Drug–drug interactions (DDI) are prevalent in combination therapy, necessitating the importance of identifying and predicting potential...

    **g Zhu, Chao Che, ... Zhaoqian Zhong in BMC Bioinformatics
    Article Open access 23 January 2024
  12. The combination of immune checkpoint inhibitors and antibody-drug conjugates in the treatment of urogenital tumors: a review insights from phase 2 and 3 studies

    With the high incidence of urogenital tumors worldwide, urinary system tumors are among the top 10 most common tumors in men, with prostate cancer...

    Puguang Yu, Chunming Zhu, ... Kefeng Wang in Cell Death & Disease
    Article Open access 19 June 2024
  13. A combination strategy of a semisynthetic macrolide, 5-O-mycaminosyltylonolide with polymyxin B nonapeptide for multi-drug resistance P. aeruginosa

    The emergence and spread of antimicrobial resistant pathogens continue to threaten our ability to combat several infections. Among them, Pseudomonas...

    Aoi Kimishima, Kazunari Sakai, ... Yukihiro Asami in The Journal of Antibiotics
    Article 19 May 2023
  14. HetBiSyn: Predicting Anticancer Synergistic Drug Combinations Featuring Bi-perspective Drug Embedding with Heterogeneous Data

    Synergistic drug combination is a promising solution to cancer treatment. Since the combinatorial space of drug combinations is too vast to be...
    Yulong Li, Hongming Zhu, ... Qin Liu in Bioinformatics Research and Applications
    Conference paper 2023
  15. Computational Pipeline for Rational Drug Combination Screening in Patient-Derived Cells

    In many complex diseases, such as cancers, resistance to monotherapies easily occurs, and longer-term treatment responses often require combinatorial...
    Paschalis Athanasiadis, Aleksandr Ianevski, ... Tero Aittokallio in Data Mining Techniques for the Life Sciences
    Protocol 2022
  16. Bioinformatics in Drug Discovery

    Drug discovery requires high cost and is a time-consuming process, and the facilitation of computer-based drug design methods is one of the most...
    Ngo Anh Dao, Thuy-Duong Vu, Dinh-Toi Chu in Advances in Bioinformatics
    Chapter 2024
  17. Drug Repurposing and Computational Drug Discovery for Viral Infections and COVID-19

    Coronavirus that has caused severity in the present-day situation since 2019 has high morbidity and mortality rate leading to the pandemic. The...
    M. V. Manohar, Amogha G. Paladhi, ... Mithun Rudrapal in CADD and Informatics in Drug Discovery
    Chapter 2023
  18. Additivity predicts the efficacy of most approved combination therapies for advanced cancer

    Most advanced cancers are treated with drug combinations. Rational design aims to identify synergistic combinations, but existing synergy metrics...

    Haeun Hwangbo, Sarah C. Patterson, ... Adam C. Palmer in Nature Cancer
    Article 16 November 2023
  19. Mechanisms, combination therapy, and biomarkers in cancer immunotherapy resistance

    Anti-programmed death 1/programmed death ligand 1 (anti-PD-1/PD-L1) antibodies exert significant antitumor effects by overcoming tumor cell immune...

    Manshi Yang, Mengying Cui, ... Weibo Jiang in Cell Communication and Signaling
    Article Open access 19 June 2024
  20. Bayesian Optimization in Drug Discovery

    Drug discovery deals with the search for initial hits and their optimization toward a targeted clinical profile. Throughout the discovery pipeline,...
    Lionel Colliandre, Christophe Muller in High Performance Computing for Drug Discovery and Biomedicine
    Protocol 2024
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