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Description of Agathobaculum massiliense sp. nov., a new bacterial species prevalent in the human gut and predicted to produce indole and tryptophan based on genomic analysis
The novel bacterial strain Marseille-P4005 T was isolated from the stool sample of a healthy donor. It is a Gram-stain negative, non-motile,...
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Structural variation among assembled genomes facilitates development of rapid and low-cost NOR-linked markers and NOR-telomere junction map** in Arabidopsis
Key messageGenome-wide structural variants we identified and new NOR-linked markers we developed would be useful for future genome-wide association...
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Transcript-specific selective translation by specialized ribosomes bearing genome-encoded heterogeneous rRNAs in V. vulnificus CMCP6
Ribosomes composed of genome-encoded heterogeneous rRNAs are implicated in the rapid adaptation of bacterial cells to environmental changes. A...
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Structure of the actively translating plant 80S ribosome at 2.2 Å resolution
In plant cells, translation occurs in three compartments: the cytosol, the plastids and the mitochondria. While the structures of the...
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An RNA Ring was Not the Progenitor of the tRNA Molecule
I analyzed the model that suggests that an RNA ring might have been the progenitor of the tRNA molecule (Demongeot and Moreira in J Theor Biol...
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Hypocholesterolemic potential of Bacillus amyloliquefaciens KAVK1 modulates lipid accumulation on 3T3-L1 adipose cells and high fat diet-induced obese rat model
The significance of microorganisms occurring in foods is predominantly targeted due to their application for identifying a novel range of the...
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Diffusible Signaling Factor, a Quorum-Sensing Molecule, Interferes with and Is Toxic Towards Bdellovibrio bacteriovorus 109J
Bdellovibrio bacteriovorus 109J is a predatory bacterium which lives by predating on other Gram-negative bacteria to obtain the nutrients it needs...
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Pannonibacter tanglangensis sp. nov., a New Species Isolated from Pond Sediment
Two bacterial strains (XCT-34 T and XCT-53) isolated from sediment samples of an artificial freshwater reservoir were analyzed using a polyphasic...
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Modified Nucleotides and RNA Structure Prediction
Nucleotide modifications are occurrent in all types of RNA and play an important role in RNA structure formation and stability. Modified bases not...
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KsgA facilitates ribosomal small subunit maturation by proofreading a key structural lesion
Ribosome assembly is orchestrated by many assembly factors, including ribosomal RNA methyltransferases, whose precise role is poorly understood....
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A novel and diverse group of Candidatus Patescibacteria from bathypelagic Lake Baikal revealed through long-read metagenomics
BackgroundLake Baikal, the world’s deepest freshwater lake, contains important numbers of Candidatus Patescibacteria (formerly CPR) in its deepest...
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Microbial gene expression in Guaymas Basin subsurface sediments responds to hydrothermal stress and energy limitation
Analyses of gene expression of subsurface bacteria and archaea provide insights into their physiological adaptations to in situ subsurface...
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Modification and editing of RNA: historical overview and important facts to remember
RNA plays a central role in many cellular processes and several peculiarities of RNAs are probably relics of an ancient primordial RNA World. To...
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Undibacterium cyanobacteriorum sp. nov., an auxin-producing bacterium isolated from fresh water during cyanobacterial bloom period
A novel Gram-negative, white-pigmented, and auxin-producing strain, 20NA77.5 T , was isolated from fresh water during cyanobacterial bloom period....
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Usage of Metatranscriptomics to Understand Oral Disease
Metatranscriptomics is a method used to comprehensively capture bacterial activity within microbiota at the transcription level. It has become an...
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The mitochondrial genome sequence of Syagrus coronata (Mart.) Becc. (Arecaceae) is characterized by gene insertion within intergenic spaces
Syagrus coronata (Mart.) Becc. belongs to the Arecaceae family. It is a species native to Brazil of ecological, social, and economic importance. To...
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p53 at the crossroad of DNA replication and ribosome biogenesis stress pathways
Despite several decades of intense research focused on understanding function(s) and disease-associated malfunction of p53, there is no sign of any...
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AZ-130 Strain from Oil-Contaminated Soil of Azerbaijan: Isolation, Antibacterial Screening, and Optimization of Cultivation Conditions
AbstractThe goal of the presented work was to isolate bacteria from oil-contaminated soils of Azerbaijan, screen them for their antibacterial...
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A necroptotic-independent function of MLKL in regulating endothelial cell adhesion molecule expression
Mixed-lineage kinase domain-like protein (MLKL) is known as the terminal executor of necroptosis. However, its function outside of necroptosis is...
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Recent advances in the potential role of RNA N4-acetylcytidine in cancer progression
N 4 -acetylcytidine (ac 4 C) is a highly conserved chemical modification widely found in eukaryotic and prokaryotic RNA, such as tRNA, rRNA, and mRNA....
