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  1. GAP43-dependent mitochondria transfer from astrocytes enhances glioblastoma tumorigenicity

    The transfer of intact mitochondria between heterogeneous cell types has been confirmed in various settings, including cancer. However, the...

    Dionysios C. Watson, Defne Bayik, ... Justin D. Lathia in Nature Cancer
    Article Open access 11 May 2023
  2. In Vivo Analysis of Heterogeneous Extracellular Vesicles Using a Red-Shifted Bioluminescence Resonance Energy Transfer Reporter Protein

    Current methods for characterizing the biodistribution of extracellular vesicles (EVs) are not sensitive enough to track EVs in vivo, despite...
    Gloria I. Perez, Michael H. Bachmann, Masamitsu Kanada in Cell-Secreted Vesicles
    Protocol 2023
  3. Investigating Plant Protein–Protein Interactions Using FRET-FLIM with a Focus on the Actin Cytoskeleton

    The study of protein–protein interactions is fundamental to understanding how actin-dependent processes are controlled through the regulation of...
    Patrick Duckney, Patrick J. Hussey in The Plant Cytoskeleton
    Protocol 2023
  4. The Charge Transfer Network Model for Arbitrary Proteins Complexes

    Due to the highly complex chemical structure of biomolecules, the extensive understanding of the electronic information for proteomics can be...
    Fang Liu, Likai Du in Biomedical and Computational Biology
    Conference paper 2023
  5. Protein Sorting Prediction

    Many computational methods are available for predicting protein sorting in bacteria. When comparing them, it is important to know that they can be...
    Henrik Nielsen in Bacterial Secretion Systems
    Protocol 2024
  6. Protein-Protein Interactions Visualized by Bimolecular Fluorescence Complementation in Arabidopsis thaliana Protoplasts from Leaf

    Bimolecular fluorescence complementation (BiFC) is a powerful tool for studying protein-protein interactions in living cells. By fusing interacting...
    Aswathy Jayasree, Hymavathi Salava, ... Sravankumar Thula in Plant Functional Genomics
    Protocol 2024
  7. Protein-Protein Interaction Studies Using Molecular Dynamics Simulation

    Protein-protein interactionProtein-protein interaction (PPI) is a crucial event for many biological functions. Studying the molecular details of PPI...
    Veerendra Kumar, Shivani Yaduvanshi in Advanced Methods in Structural Biology
    Protocol 2023
  8. Protein–Protein Interactions in Abiotic Stress Signaling: An Overview of Biochemical and Biophysical Methods of Characterization

    The identification and characterization of bona fide abiotic stress signaling proteins can occur at different levels of the complete in vivo...
    Ivan Couée, Gwenola Gouesbet in Plant Abiotic Stress Signaling
    Protocol 2023
  9. Relative Protein Lifetime Measurement in Plants Using Tandem Fluorescent Protein Timers

    Targeted protein degradation plays a wide range of important roles in plant growth and development, but analyzing protein turnover in vivo is...
    Hongtao Zhang, Eric Linster, ... Frederica L. Theodoulou in Plant Proteostasis
    Protocol 2023
  10. Transfer RNA modifications and modifying enzymes in Saccharomyces cerevisiae

    Transfer RNAs are adaptor molecules, which decode mRNA into protein and, thereby, play a central role in gene expression. During the maturation of a...
    Marcus J.O. Johansson, Anders S. Byström in Fine-Tuning of RNA Functions by Modification and Editing
    Chapter
  11. Collectively encoding protein properties enriches protein language models

    Pre-trained natural language processing models on a large natural language corpus can naturally transfer learned knowledge to protein domains by...

    **gmin An, **aogang Weng in BMC Bioinformatics
    Article Open access 08 November 2022
  12. Unfolded Protein Response in Arabidopsis

    The unfolded protein response (UPR) is a highly regulated signaling pathway that is largely conserved across eukaryotes. It is essential for cell...
    Cristina Ruberti, Federica Brandizzi in The Plant Endoplasmic Reticulum
    Protocol 2024
  13. Peptide-Based Mass Spectrometry for the Investigation of Protein Complexes

    In the last two decades, biological mass spectrometry has become the gold standard for the identification of proteins in biological samples. The...
    Chapter 2024
  14. Drug Design Methods to Regulate Protein–Protein Interactions

    Inhibiting anomalous protein–protein interactions has led to the discovery of drugs (small molecules, precisely) that can inhibit such interactions...
    Krishna Mohan Poluri, Khushboo Gulati, ... Nupur Nagar in Protein-Protein Interactions
    Chapter 2023
  15. Protein-Protein-Wechselwirkungen

    Bei jedem biologischen Prozess spielen Protein-Protein-Wechselwirkungen eine wesentliche Rolle: DNA-Replikation, Transkription, Translation,...
    Peter Uetz, Eva-Kathrin Ehmoser, ... Ute Curth in Bioanalytik
    Chapter 2022
  16. Protein–Protein Interactions in Neurodegenerative Diseases

    Neurodegeneration is a state of progressive decay of neuronal structure and function. It has gained scientific attention owing to the fact that...
    Krishna Mohan Poluri, Khushboo Gulati, ... Nupur Nagar in Protein-Protein Interactions
    Chapter 2023
  17. Protein Markers for Somatic Embryogenesis

    The capacity for somatic embryogenesis is a remarkable property of plant cells. Somatic embryogenesis is the process by which somatic cells...
    Magdalena I. Tchorbadjieva in Somatic Embryogenesis
    Chapter
  18. Direct GPCR-EGFR interaction enables synergistic membrane-to-nucleus information transfer

    We addressed the heteromerization of the epidermal growth factor receptor (EGFR) with G-protein coupled receptors (GPCR) on the basis of...

    Michael Gekle, Robert Eckenstaler, ... Ralf Benndorf in Cellular and Molecular Life Sciences
    Article Open access 20 June 2024
  19. Analyzing Protein–Protein Interactions Using the Split-Ubiquitin System

    The split-ubiquitin technology was developed over 20 years ago as an alternative to Gal4-based, yeast-two-hybrid methods to identify interacting...
    Rucha Karnik, Michael R. Blatt in Protein-Protein Interactions
    Protocol 2023
  20. The unfolded protein response unfolds

    As a key organelle of protein targeting and secretion, the endoplasmic reticulum (ER) plays host to a wide variety of protein maturation steps...
    Maho Niwa in Chaperones
    Chapter
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