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Showing 41-60 of 10,000 results
  1. Proteome-scale tagging and functional screening in mammalian cells by ORFtag

    The systematic determination of protein function is a key goal of modern biology, but remains challenging with current approaches. Here we present...

    Filip Nemčko, Moritz Himmelsbach, ... Stefan L. Ameres in Nature Methods
    Article Open access 05 July 2024
  2. Microsecond time-resolved X-ray scattering by utilizing MHz repetition rate at second-generation XFELs

    Detecting microsecond structural perturbations in biomolecules has wide relevance in biology, chemistry and medicine. Here we show how MHz repetition...

    Patrick E. Konold, Leonardo Monrroy, ... Sebastian Westenhoff in Nature Methods
    Article Open access 05 July 2024
  3. A comprehensive review of computational cell cycle models in guiding cancer treatment strategies

    This article reviews the current knowledge and recent advancements in computational modeling of the cell cycle. It offers a comparative analysis of...

    Chenhui Ma, Evren Gurkan-Cavusoglu in npj Systems Biology and Applications
    Article Open access 05 July 2024
  4. Deepvirusclassifier: a deep learning tool for classifying SARS-CoV-2 based on viral subtypes within the coronaviridae family

    Purpose

    In this study, we present DeepVirusClassifier, a tool capable of accurately classifying Severe Acute Respiratory Syndrome Coronavirus 2...

    Karolayne S. Azevedo, Luísa C. de Souza, ... Marcelo A. C. Fernandes in BMC Bioinformatics
    Article Open access 05 July 2024
  5. CRISPR-array-mediated imaging of non-repetitive and multiplex genomic loci in living cells

    Dynamic imaging of genomic loci is key for understanding gene regulation, but methods for imaging genomes, in particular non-repetitive DNAs, are...

    Liang-Zhong Yang, Yi-Hui Min, ... Ling-Ling Chen in Nature Methods
    Article 04 July 2024
  6. Sha** Drosophila eggs: unveiling the roles of Arpc1 and cpb in morphogenesis

    The Drosophila egg chamber (EC) starts as a spherical tissue at the beginning. With maturation, the outer follicle cells of EC collectively migrate...

    Poulami Chatterjee, Sandipan Mukherjee, Pralay Majumder in Functional & Integrative Genomics
    Article 04 July 2024
  7. VirRep: a hybrid language representation learning framework for identifying viruses from human gut metagenomes

    Identifying viruses from metagenomes is a common step to explore the virus composition in the human gut. Here, we introduce VirRep, a hybrid language...

    Yanqi Dong, Wei-Hua Chen, **ng-Ming Zhao in Genome Biology
    Article Open access 04 July 2024
  8. LongTR: genome-wide profiling of genetic variation at tandem repeats from long reads

    Tandem repeats are frequent across the human genome, and variation in repeat length has been linked to a variety of traits. Recent improvements in...

    Helyaneh Ziaei Jam, Justin M. Zook, ... Melissa Gymrek in Genome Biology
    Article Open access 04 July 2024
  9. quantms: a cloud-based pipeline for quantitative proteomics enables the reanalysis of public proteomics data

    The volume of public proteomics data is rapidly increasing, causing a computational challenge for large-scale reanalysis. Here, we introduce quantms (

    Chengxin Dai, Julianus Pfeuffer, ... Yasset Perez-Riverol in Nature Methods
    Article Open access 04 July 2024
  10. Programming tumor evolution with selection gene drives to proactively combat drug resistance

    Most targeted anticancer therapies fail due to drug resistance evolution. Here we show that tumor evolution can be reproducibly redirected to...

    Scott M. Leighow, Joshua A. Reynolds, ... Justin R. Pritchard in Nature Biotechnology
    Article 04 July 2024
  11. Systematic comparison of sequencing-based spatial transcriptomic methods

    Recent developments of sequencing-based spatial transcriptomics (sST) have catalyzed important advancements by facilitating transcriptome-scale...

    Yue You, Yuting Fu, ... Luyi Tian in Nature Methods
    Article Open access 04 July 2024
  12. Gapr for large-scale collaborative single-neuron reconstruction

    Whole-brain analysis of single-neuron morphology is crucial for unraveling the complex structure of the brain. However, large-scale neuron...

    Lingfeng Gou, Yanzhi Wang, ... Jun Yan in Nature Methods
    Article 03 July 2024
  13. SETDB1 regulates short interspersed nuclear elements and chromatin loop organization in mouse neural precursor cells

    Background

    Transposable elements play a critical role in maintaining genome architecture during neurodevelopment. Short Interspersed Nuclear Elements...

    Dai**g Sun, Yueyan Zhu, ... Yan Jiang in Genome Biology
    Article Open access 03 July 2024
  14. Editor’s pick: Unnatural Products

    Michael Eisenstein in Nature Biotechnology
    Article 03 July 2024
  15. Gut microbiota DPP4-like enzymes are increased in type-2 diabetes and contribute to incretin inactivation

    Background

    The gut microbiota controls broad aspects of human metabolism and feeding behavior, but the basis for this control remains largely unclear....

    Marta Olivares, Paula Hernández-Calderón, ... Alfonso Benítez-Páez in Genome Biology
    Article Open access 03 July 2024
  16. Editor’s pick: Empress Therapeutics

    Michael Eisenstein in Nature Biotechnology
    Article 03 July 2024
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