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Comparative analysis of genomic- and EST-SSRs in European plum (Prunus domestica L.): implications for the diversity analysis of polyploids
Simple sequence repeats (SSRs) are among the most useful DNA markers in plant science. The aim of this study was to compare the features and...
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Genome-wide identification, characterization and primer designing of simple sequence repeats across Leguminosae family
Legumes are important clade of commercially important family Leguminosae that mainly include medicinal, flowering and edible plants. Although the...
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Pipeline for develo** polymorphic microsatellites in species without reference genomes
Microsatellites, also known as simple sequence repeats (SSRs), are the preferred type of marker for many genetic applications. In conjunction with...
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Genome-wide characterization and development of SSR markers for genetic diversity analysis in northwestern Himalayas Walnut (Juglans regia L.)
In the present study, we designed and validated genome-wide polymorphic SSR markers (110 SSRs) by mining the walnut genome. A total of 198,924 SSR...
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Identification and validation of SSR markers for Xanthomonas axonopodis pv. punicae an incitant of bacterial blight of pomegranate
This study reports genome wide characterization and development of first set of microsatellite markers through in silico analysis of eight sequenced Xa...
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Insights into genome plasticity and gene regulation in Orientia tsutsugamushi through genome-wide mining of microsatellite markers
Microsatellite markers are being used for molecular identification and characterization as well as estimation of evolution patterns due to their...
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Comparative genomics in phytopathogenic prokaryotes reveals the higher relative abundance and density of long-SSRs in the smallest prokaryotic genome
Frequency and distribution of long-SSRs were studied in 18 phytopathogenic prokaryotes. Higher relative abundance of the long-SSRs was observed in...
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Genome-wide identification and characterization of microsatellite markers within the Avipoxviruses
Microsatellite markers or Simple Sequence Repeats (SSRs) are gaining importance for molecular characterization of the virus as well as estimation of...
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Characterization and development of transcriptome-derived novel EST-SSR markers to assess genetic diversity in Chaetomium globosum
Chaetomium globosum Kunze, an internationally recognized biocontrol fungus. It mycoparasitizes various plant pathogens and produce antifungal...
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Genome-wide analysis and expression profile of TCP gene family under drought and salinity stress condition in cowpea (Vigna unguiculata (L.) Walp.)
TCP transcription factors are known to regulate abiotic stress condition, but their role in V. unguiculata remains unexplored. So, in silico analysis...
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Integrated Use of Molecular and Omics Approaches for Breeding High Yield and Stress Resistance Chili Peppers
In a rapidly changing environment along with the growing population, crop production and improvement are the most sought-after sectors in the world....
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MusaRgeneDB: an online comprehensive database for disease resistance genes in Musa spp.
Banana is one of the major food crops and its production is subject to many pests and diseases. Banana breeding exploits wild relatives and...
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Map** QTLs for Alternaria blight in Linseed (Linum usitatissimum L.)
A SSR-based linkage map of linseed constructed based on 154 individual lines of F 2 map** population derived from JRF-4 (disease-resistant) and...
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Implications of genome simple sequence repeats signature in 98 Polyomaviridae species
The analysis of simple sequence repeats (SSRs) in 98 genomes across four genera of the family Polyomaviridae was performed. The genome size ranged...
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Development of genome-specific SSR markers for the identification of introgressed segments of Sinapis alba in the Brassica juncea background
Sinapis alba L. (white mustard) is recognized for carrying host resistance against several biotic stresses including, Alternaria brassicae , which is...
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Development of a new set of genic SSR markers in the genus Gentiana: in silico mining, characterization and validation
Gentiana is an important genus of around 360 medicinally important species, majority of which are not well characterized. Despite its importance,...
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Identification of novel QTLs for late leaf spot resistance and validation of a major rust QTL in peanut (Arachis hypogaea L.)
Co-occurrence of two devastating foliar-fungal diseases of peanut, viz., late leaf spot (LLS), and rust may cause heavy yield loss besides adversely...
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Development and characterization of genomic SSR marker for virulent strain-specific Colletotrichum falcatum infecting sugarcane
Colle totrichum falcatum, an intriguing pathogen causing red rot in sugarcane, exhibits enormous variation for pathogenicity under field conditions. A...
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Fig Tree Genome and Diversity
The common fig (Ficus carica L.) is one of the most remarkable fruit species of the Mediterranean area. Its adaptive potentialities to various...
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Estimation of genetic diversity and population structure in Tinospora cordifolia using SSR markers
Thirty polymorphic SSRs, derived from RNA sequencing of Tinospora cordifolia (willd.), were utilized for genetic diversity and population structure...
