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  1. Public attitudes toward cloud computing and willingness to share personal health records (PHRs) and genome data for health care research in Japan

    Japan’s government aims to promote the linkage of medical records, including medical genomic testing data and personal health records (PHRs), via...

    Mayumi Kusunose, Kaori Muto in Human Genome Variation
    Article Open access 30 March 2023
  2. Personal transcriptome variation is poorly explained by current genomic deep learning models

    Genomic deep learning models can predict genome-wide epigenetic features and gene expression levels directly from DNA sequence. While current models...

    Connie Huang, Richard W. Shuai, ... Nilah M. Ioannidis in Nature Genetics
    Article Open access 30 November 2023
  3. Interference of the Human Genome with Nutrients

    In this chapter, we will discuss the complex relation between our environment, diet and genome. Genes influence our response to diet, while...
    Carsten Carlberg, Eunike Velleuer, Ferdinand Molnár in Molecular Medicine
    Chapter 2023
  4. Benchmarking of deep neural networks for predicting personal gene expression from DNA sequence highlights shortcomings

    Deep learning methods have recently become the state of the art in a variety of regulatory genomic tasks 1 6 , including the prediction of gene...

    Alexander Sasse, Bernard Ng, ... Sara Mostafavi in Nature Genetics
    Article 30 November 2023
  5. Implementation and evaluation of personal genetic testing as part of genomics analysis courses in German universities

    Purpose

    Due to the increasing application of genome analysis and interpretation in medical disciplines, professionals require adequate education....

    Tamara Slosarek, Susanne Ibing, ... Claudia Schurmann in BMC Medical Genomics
    Article Open access 05 April 2023
  6. Genome-Wide Principles of Gene Regulation

    In this chapter, we will discuss about new principles of genome-wide gene regulation as obtained through data from Big Biology projects like ENCODE,...
    Carsten Carlberg, Eunike Velleuer, Ferdinand Molnár in Molecular Medicine
    Chapter 2023
  7. The Human Genome Organisation (HUGO) and a vision for Ecogenomics: the Ecological Genome Project

    Background

    The following outlines ethical reasons for widening the Human Genome Organisation’s (HUGO) mandate to include ecological genomics.

    ...
    Benjamin Capps, Ruth Chadwick, ... Ingrid Winship in Human Genomics
    Article Open access 18 December 2023
  8. The Human Genome and Its Variations

    In this chapter, we will briefly describe the genetic adaption of anatomically modern humans due to migration from Africa to new geographic and...
    Carsten Carlberg, Eunike Velleuer, Ferdinand Molnár in Molecular Medicine
    Chapter 2023
  9. Epigenomes get personal

    Linda Koch in Nature Reviews Genetics
    Article 13 April 2023
  10. Optical Genome Map**: A Machine-Based Platform in Cytogenomics

    Optical genome map** (OGM) has generated excitement following decades of research and development. Now, commercially available technical platforms...
    **g Christine Ye, Guilin Tang in Cancer Cytogenetics and Cytogenomics
    Protocol 2024
  11. Survey of attitude to human genome modification in Nigeria

    Gene editing and mitochondrial replacement therapy (MRT) are biotechnologies used to modify the host nuclear and mitochondrial DNA, respectively....

    Maryam Jibrilla, Hayatu Raji, Malachy Ifeanyi Okeke in Journal of Community Genetics
    Article 23 November 2023
  12. Genome-resolved metagenomics: a game changer for microbiome medicine

    Recent substantial evidence implicating commensal bacteria in human diseases has given rise to a new domain in biomedical research: microbiome...

    Nayeon Kim, Junyeong Ma, ... Insuk Lee in Experimental & Molecular Medicine
    Article Open access 01 July 2024
  13. The interplay of ethics and genetic technologies in balancing the social valuation of the human genome in UNESCO declarations

    This study investigates changes in the social valuation of the human genome over the more than 30 years since the establishment of the Human Genome...

    Hristina Gaydarska, Kayo Takashima, ... Jusaku Minari in European Journal of Human Genetics
    Article Open access 15 February 2024
  14. Simulating the Genetics Clinic of the Future — whether undergoing whole-genome sequencing shapes professional attitudes

    Whole-genome sequencing (WGS) can provide valuable health insight for research participants or patients. Opportunities to be sequenced are increasing...

    Minna Brunfeldt, Harriet Teare, ... Terry Vrijenhoek in Journal of Community Genetics
    Article Open access 27 January 2022
  15. The Egypt Genome Project

    Mohamed A. Elmonem, Neveen A. Soliman, ... Khaled Amer in Nature Genetics
    Article 29 April 2024
  16. Building cloud computing environments for genome analysis in Japan

    This review article describes the current status of data archiving and computational infrastructure in the field of genomic medicine, focusing...

    Osamu Ogasawara in Human Genome Variation
    Article Open access 14 December 2022
  17. Cloud service checklist for academic communities and customization for genome medical research

    In this paper, we present a cloud service checklist designed to help IT administrators or researchers in academic organizations select the most...

    Kumiko Kobayashi, Hiroshi Yoshida, ... Kento Aida in Human Genome Variation
    Article Open access 17 October 2022
  18. Whole Genome Sequencing of African Swine Fever

    Next-generation sequencing (NGS) technologies have been powerfully applied in both research and clinical settings for the understanding and control...
    Ha Thi Thanh Tran, Anh Duc Truong, Hoang Vu Dang in African Swine Fever Virus
    Protocol 2022
  19. A Guide to Genome-Wide Association Study Design for Diabetic Retinopathy

    Diabetic retinopathy (DR) is the most common microvascular complication related to diabetes. There is evidence that genetics play an important role...
    Rajya L. Gurung, Kathryn P. Burdon, Bennet J. McComish in Diabetic Retinopathy
    Protocol 2023
  20. HLA Ty** and Mutation Calling from Normal and Tumor Whole Genome Sequencing Data with ALPHLARD-NT

    HLA somatic mutations can alter the expression and function of HLA molecules, which in turn affect the ability of the immune system to recognize and...
    Shuto Hayashi, Seiya Imoto in HLA Ty**
    Protocol 2024
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