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Short open reading frames (sORFs) and microproteins: an update on their identification and validation measures
A short open reading frame (sORFs) constitutes ≤ 300 bases, encoding a microprotein or sORF-encoded protein (SEP) which comprises ≤ 100 amino acids....
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Upstream open reading frame-introducing variants in patients with primary familial brain calcification
More than 50% of patients with primary familial brain calcification (PFBC), a rare neurological disorder, remain genetically unexplained. While some...
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Pan-cancer analysis of transcripts encoding novel open-reading frames (nORFs) and their potential biological functions
Uncharacterized and unannotated open-reading frames, which we refer to as novel open reading frames (nORFs), may sometimes encode peptides that...
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In silico identification of novel open reading frames in Plasmodium falciparum oocyte and salivary gland sporozoites using proteogenomics framework
BackgroundPlasmodium falciparum causes the deadliest form of malaria, which remains one of the most prevalent infectious diseases. Unfortunately,...
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Comparative genomics of the Neodiprion sertifer nucleopolyhedrovirus from Turkey with the fewest ORFs among baculoviruses
The complete genome of a European pine sawfly Neodiprion sertifer nucleopolyhedrovirus (NeseNPV-TR) was sequenced and characterized from...
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Identification and molecular characterization of a novel totivirus from Mangifera indica
In this study, we determined the complete genome sequence of a novel totivirus, tentatively named "Mangifera indica totivirus 1" (MiTV1), identified...
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Genome analysis and classification of Xanthomonas bacteriophage AhaSv, a new member of the genus Salvovirus
Xanthomonas phage AhaSv was isolated from lake water. Genome sequencing showed that its genome is a linear dsDNA molecule with a length of 55,576 bp...
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Characterization and genomic analysis of JC01, a novel bacteriophage infecting Cronobacter sakazakii
The lytic bacteriophage JC01 was isolated using a strain of Cronobacter sakazakii previously isolated from powdered infant formula (PIF). The...
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Isolation, characterization and genomic analysis of the novel Arthrobacter sp. phage SWEP2
A new virulent phage, SWEP2, infecting the Arthrobacter sp. 5B strain, was isolated from black soil samples in northeastern China. SWEP2 has a latent...
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Exploring the extrachromosomal plasmid rDNA of Naegleria fowleri AY27 genotype II: A human brain-eating amoeba via high-throughput sequencing
Naegleria fowleri , also known as brain-earing amoeba, causes severe and rapidly fatal CNS infection in humans called primary amebic...
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Guinea pig herpes like virus is a gamma herpesvirus
Guinea Pig Herpes-Like Virus (GPHLV) is a virus isolated from leukemic guinea pigs with herpes virus-like morphology described by Hsiung and Kaplow...
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Whole genome sequence of mulberry crinivirus, a new member of the genus Crinivirus
The whole genome sequence of mulberry crinivirus (MuCV), a novel member of the genus Crinivirus (family Closteroviridae ) identified in mulberry ( Morus...
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Molecular characterization of a novel umbra-like virus from Thuja orientalis (arborvitae) in South Korea
A novel umbra-like virus was identified in arborvitae in South Korea using RNA sequencing (RNA-seq). The virus identified was tentatively named...
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The complete genome sequence of a putative novel cytorhabdovirus identified in Chelidonium majus in China
A new cytorhabdovirus, tentatively named “chelidonium yellow mottle associated virus” (CheYMaV), was identified in Chelidonium majus with yellow...
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Complete genome sequence of a novel totivirus isolated from the leaves of Myrica rubra
Chinese bayberry is a fruit that is appreciated for its taste. A novel totivirus associated with rolling, disfiguring, chlorotic and vein-clearing...
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Genomic characterization of the novel bacteriophage IME183, infecting Klebsiella pneumoniae of capsular type K2
Klebsiella pneumoniae causes a wide range of serious and life-threatening infections. Klebsiella phage IME183, isolated from hospital sewage,...
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Complete genome sequence of a carlavirus identified in grapevine (Vitis sp) in Greece
Using high-throughput sequencing, we identified a novel carlavirus sequence in a 28-year-old ‘Kotsifali’ grapevine sample collected in Heraklion...
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Complete nucleotide sequence of chrysanthemum virus D, a polero-like virus
A putative new polerovirus, named “chrysanthemum virus D” (ChVD), was detected in a Chrysanthemum morifolium plant in South Korea. The virus was...
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Complete genome sequence of a novel double-stranded RNA virus infecting the phytopathogenic fungus Rhizopus stolonifer
In this study, we report the complete genome sequence of a novel toti-like virus, tentatively named "Rhizopus stolonifer double-stranded RNA virus 1"...
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Complete genome characterization of cacao leafroll virus, a newly described cacao-infecting polerovirus
The complete genome sequence of cacao leafroll virus (CaLRV; family Solemoviridae , genus Polerovirus ) was determined by high-throughput sequencing of...
