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  1. Somatic mutations can induce a noninflamed tumour microenvironment via their original gene functions, despite deriving neoantigens

    Background

    Identifying biomarkers to predict immune checkpoint inhibitor (ICI) efficacy is warranted. Considering that somatic mutation-derived...

    Takamasa Ishino, Shusuke Kawashima, ... Yosuke Togashi in British Journal of Cancer
    Article Open access 02 February 2023
  2. Identification of phenocopies improves prediction of targeted therapy response over DNA mutations alone

    DNA mutations in specific genes can confer preferential benefit from drugs targeting those genes. However, other molecular perturbations can...

    Hamza Bakhtiar, Kyle T. Helzer, ... Shuang G. Zhao in npj Genomic Medicine
    Article Open access 17 October 2022
  3. Charge-changing point mutations in the E protein of tick-borne encephalitis virus

    Introduction of point mutations is one of the forces enabling arboviruses to rapidly adapt in a changing environment. The influence of these...

    Liubov I. Kozlovskaya, Dmitry I. Osolodkin, ... Galina G. Karganova in Archives of Virology
    Article 05 March 2023
  4. A descriptive study on isoniazid resistance-associated mutations, clustering and treatment outcomes of drug-resistant tuberculosis in a high burden country

    Purpose

    To describe katG and inhA mutations, clinical characteristics, treatment outcomes and clustering of drug-resistant tuberculosis (TB) in the...

    Juliana Maira Watanabe Pinhata, Lucilaine Ferrazoli, ... Rosângela Siqueira de Oliveira in European Journal of Clinical Microbiology & Infectious Diseases
    Article 09 November 2023
  5. Novel CWF19L1 mutations in patients with spinocerebellar ataxia, autosomal recessive 17

    Spinocerebellar ataxia, autosomal recessive-17 (SCAR17) is a rare hereditary ataxia characterized by ataxic gait, cerebellar signs and occasionally...

    Prashant Phulpagar, Vikram V. Holla, ... Babylakshmi Muthusamy in Journal of Human Genetics
    Article 26 September 2023
  6. Rapid emergence and transmission of virulence-associated mutations in the oral poliovirus vaccine following vaccination campaigns

    There is an increasing burden of circulating vaccine-derived polioviruses (cVDPVs) due to the continued use of oral poliovirus vaccine (OPV)....

    Katharine S. Walter, Jonathan Altamirano, ... Yvonne Maldonado in npj Vaccines
    Article Open access 25 September 2023
  7. Antibody Deficiency in Patients with Biallelic KARS1 Mutations

    Biallelic KARS1 mutations cause KARS-related diseases, a rare syndromic condition encompassing central and peripheral nervous system impairment,...

    Francesco Saettini, Fabiola Guerra, ... Andrea Biondi in Journal of Clinical Immunology
    Article 28 September 2023
  8. Intrinsic D614G and P681R/H mutations in SARS-CoV-2 VoCs Alpha, Delta, Omicron and viruses with D614G plus key signature mutations in spike protein alters fusogenicity and infectivity

    The SARS-CoV-2 virus has been rapidly evolving over the time and the genetic variation has led to the generation of Variants of Concerns (VoC), which...

    Ritika Khatri, Gazala Siddqui, ... Sweety Samal in Medical Microbiology and Immunology
    Article Open access 30 December 2022
  9. Naturally occurring spike mutations influence the infectivity and immunogenicity of SARS-CoV-2

    Mutations in SARS-CoV-2 variants of concern (VOCs) have enhanced transmissibility and immune evasion with respect to current vaccines and...

    Qiaoli Peng, Runhong Zhou, ... Zhiwei Chen in Cellular & Molecular Immunology
    Article 12 October 2022
  10. Whole exome sequencing and transcriptome analysis in two unrelated patients with novel SET mutations

    The human SET nuclear proto-oncogene ( SET ) gene is a protein-coding gene that encodes proteins that affects chromatin remodeling and gene...

    **n Pan, Sihan Liu, ... Bo Tan in Journal of Human Genetics
    Article 22 September 2023
  11. SNPs and Personalized Medicine: Scrutinizing Pathogenic Synonymous Mutations for Precision Oncology

    Synonymous mutations do not modify the encoded amino acid, but might result in serious non-silent consequences through different molecular...
    Samuel Peña-Llopis in Single Nucleotide Polymorphisms
    Chapter 2022
  12. KDM4C-mediated senescence defense is a targetable vulnerability in gastric cancer harboring TP53 mutations

    Background

    Gastric cancer patients harboring a TP53 mutation exhibit a more aggressive and chemoresistant phenotype. Unfortunately, efforts to...

    Kaiqing Wang, Zhicheng Gong, ... Bojian Fei in Clinical Epigenetics
    Article Open access 17 October 2023
  13. STAT5a and SH2B3 novel mutations display malignancy roles in a triple-negative primary myelofibrosis patient

    Primary myelofibrosis (PMF) patients frequently have JAK2 (V617F) , CALR (exon 9), or MPL (W515 or exon 10) strong driver gene mutation, which...

    Shubing Zhang, **hua Yan, ... Hao Jiang in Cancer Gene Therapy
    Article 22 December 2023
  14. Mutations in the S gene of hepatitis B virus in three generations of patients with chronic hepatitis B

    Failure to neutralize HBsAg and subsequent escape from the host immune system may be caused by HBsAg mutations, particularly in the "a" determinant,...

    Malihe Naderi, Seyed Masoud Hosseini, ... Abdolvahab Moradi in Virus Genes
    Article 12 June 2023
  15. TP53 somatic mutations in Asian breast cancer are associated with subtype-specific effects

    Background

    Recent genomics studies of breast cancer in Asian cohorts have found a higher prevalence of TP53 mutations in Asian breast cancer patients...

    Mohana Eswari Ragu, Joanna Mei Ch’wan Lim, ... Jia-Wern Pan in Breast Cancer Research
    Article Open access 26 April 2023
  16. Upregulated ECM genes and increased synaptic activity in Parkinson’s human DA neurons with PINK1/ PRKN mutations

    Parkinson’s disease (PD) is the second most prevalent neurodegenerative disease. Primary symptoms of PD arise with the loss of dopaminergic (DA)...

    Utkarsh Tripathi, Idan Rosh, ... Shani Stern in npj Parkinson's Disease
    Article Open access 18 May 2024
  17. Analysis of somatic mutations in whole blood from 200,618 individuals identifies pervasive positive selection and novel drivers of clonal hematopoiesis

    Human aging is marked by the emergence of a tapestry of clonal expansions in dividing tissues, particularly evident in blood as clonal hematopoiesis...

    Nicholas Bernstein, Michael Spencer Chapman, ... Jyoti Nangalia in Nature Genetics
    Article Open access 14 May 2024
  18. Mechanisms of PiT2-loop7 Missense Mutations Induced Pi Dyshomeostasis

    PiT2 is an inorganic phosphate (Pi) transporter whose mutations are linked to primary familial brain calcification (PFBC). PiT2 mainly consists of...

    Hao Sun, Xuan Xu, ... **g-Yu Liu in Neuroscience Bulletin
    Article 17 June 2022
  19. Germline mutations of homologous recombination genes and clinical outcomes in pancreatic cancer: a multicenter study in Taiwan

    Background

    Cancer susceptibility germline mutations are associated with pancreatic ductal adenocarcinoma (PDAC). However, the hereditary status of...

    Siao Muk Cheng, Yung-Yeh Su, ... Li-Tzong Chen in Journal of Biomedical Science
    Article Open access 13 February 2024
  20. Learning from cancer mutations

    Nicholas J. Bernard in Nature Immunology
    Article 01 March 2024
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