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Article
Open AccessBoosting with stumps for predicting transcription start sites
Promoter prediction is a difficult but important problem in gene finding, and it is critical for elucidating the regulation of gene expression. We introduce a new promoter prediction program, CoreBoost, which ...
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Article
Open AccessGenome-wide promoter extraction and analysis in human, mouse, and rat
Large-scale and high-throughput genomics research needs reliable and comprehensive genome-wide promoter annotation resources. We have conducted a systematic investigation on how to improve mammalian promoter p...
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Article
Computational comparison of two mouse draft genomes and the human golden path
The availability of both mouse and human draft genomes has marked the beginning of a new era of comparative mammalian genomics. The two available mouse genome assemblies, from the public mouse genome sequencin...