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  1. Article

    Open Access

    Adhere to the Chinese dietary guidelines associated with better subjective well-being: evidence from a cross-sectional survey and a daily diary investigation

    Subjective well-being (SWB) plays an essential role in general health. Although beneficial effects of selected micronutrients and foods on SWB have been reported, they do not reflect the impact of the habitual...

    Jiaci Lin, Fuhua Yang, Miaosen Lan, Yichen Ding, Keli Yin in BMC Public Health (2024)

  2. No Access

    Article

    Design strategies for rechargeable aqueous metal-ion batteries

    Rechargeable aqueous metal-ion batteries (AMBs) have attracted extensive scientific and commercial interest due to their potential for cost-effective, highly safe, and scalable stationary energy storage. Howev...

    Yang Li, **n Zhao, Yifu Gao, Yichen Ding, Zhichun Si in Science China Chemistry (2024)

  3. No Access

    Article

    Extended reality for biomedicine

    Extended reality (XR) refers to an umbrella of methods that allows users to be immersed in a 3D or a 4D (spatial + temporal) virtual environment to various extents, including virtual reality (VR), augmented re...

    Jie Yuan, Sohail S. Hassan, Jiaojiao Wu, Casey R. Koger in Nature Reviews Methods Primers (2023)

  4. No Access

    Article

    Computational Analysis of Cardiac Contractile Function

    Heart failure results in the high incidence and mortality all over the world. Mechanical properties of myocardium are critical determinants of cardiac function, with regional variations in myocardial contracti...

    **nyuan Zhang, Ritzia Vinu Alexander, Jie Yuan, Yichen Ding in Current Cardiology Reports (2022)

  5. Article

    Open Access

    Genome-centric analysis of short and long read metagenomes reveals uncharacterized microbiome diversity in Southeast Asians

    Despite extensive efforts to address it, the vastness of uncharacterized ‘dark matter’ microbial genetic diversity can impact short-read sequencing based metagenomic studies. Population-specific biases in geno...

    Jean-Sebastien Gounot, Minghao Chia, Denis Bertrand, Woei-Yuh Saw in Nature Communications (2022)

  6. No Access

    Article

    Modulations of face perception in response to a novel time-varying optical perturbation after aberration correction using adaptive optics

    The role of time in the perception of optical perturbation has received little attention. We sought to establish a novel time-varying perturbation in an image sequence using adaptive optics. We introduced the ...

    Elie de Lestrange-Anginieur, Yichen Ding in The European Physical Journal Special Topics (2022)

  7. No Access

    Article

    Real-time volumetric reconstruction of biological dynamics with light-field microscopy and deep learning

    Light-field microscopy has emerged as a technique of choice for high-speed volumetric imaging of fast biological processes. However, artifacts, nonuniform resolution and a slow reconstruction speed have limite...

    Zhaoqiang Wang, Lanxin Zhu, Hao Zhang, Guo Li, Chengqiang Yi, Yi Li in Nature Methods (2021)

  8. No Access

    Protocol

    In Vivo Clonal Analysis of Cardiomyocytes

    The development of the CreER/LoxP system has enabled temporal control and cell type specificity of gene activation or repression. A common application of this system involves lineage tracing and examining the ...

    Ngoc B. Nguyen, G. Esteban Fernandez, Yichen Ding, Tzung Hsiai in Cardiac Regeneration (2021)

  9. Article

    Open Access

    Population dynamics and transcriptomic responses of Pseudomonas aeruginosa in a complex laboratory microbial community

    Pseudomonas aeruginosa tends to be among the dominant species in multi-species bacterial consortia in diverse environments. To understand P. aeruginosa’s physiology and interactions with co-existing bacterial spe...

    Yingying Cheng, Joey Kuok Hoong Yam, Zhao Cai, Yichen Ding in npj Biofilms and Microbiomes (2019)

  10. Article

    Open Access

    In vivo long-term investigation of tumor bearing mKate2 by an in-house fluorescence molecular imaging system

    Optical imaging is one of the most common, low-cost imaging tools used for investigating the tumor biological behavior in vivo. This study explores the feasibility and sensitivity of a near infrared fluorescen...

    Kedi Zhou, Yichen Ding, Ivan Vuletic, Yonglu Tian, Jun Li in BioMedical Engineering OnLine (2018)

  11. No Access

    Article

    Simulating Developmental Cardiac Morphology in Virtual Reality Using a Deformable Image Registration Approach

    While virtual reality (VR) has potential in enhancing cardiovascular diagnosis and treatment, prerequisite labor-intensive image segmentation remains an obstacle for seamlessly simulating 4-dimensional (4-D, 3...

    Arash Abiri, Yichen Ding, Parinaz Abiri in Annals of Biomedical Engineering (2018)

  12. Article

    Open Access

    Characterization of a novel multidrug resistance plasmid pSGB23 isolated from Salmonella enterica subspecies enterica serovar Saintpaul

    Salmonella enterica subspecies enterica serovar Saintpaul (S. Saintpaul) is an important gut pathogen which causes salmonellosis worldwide. Although intestinal salmonellosis is usually self-limiting, it can be li...

    Yichen Ding, Ye Htut Zwe, Seow Fong Chin, Gurjeet S. Kohli in Gut Pathogens (2018)

  13. Article

    Open Access

    Acquisition of resistance to carbapenem and macrolide-mediated quorum sensing inhibition by Pseudomonas aeruginosa via ICETn43716385

    Pseudomonas aeruginosa can cause life-threatening infections in immunocompromised patients. The first-line agents to treat P. aeruginosa infections are carbapenems. However, the emergence of carbapenem-resistant

    Yichen Ding, Jeanette W. P. Teo, Daniela I. Drautz-Moses in Communications Biology (2018)

  14. No Access

    Article

    Light-Sheet Imaging to Elucidate Cardiovascular Injury and Repair

    Real-time 3-dimensional (3-D) imaging of cardiovascular injury and regeneration remains challenging. We introduced a multi-scale imaging strategy that uses light-sheet illumination to enable applications of ca...

    Yichen Ding, Juhyun Lee, Jeffrey J. Hsu, Chih-Chiang Chang in Current Cardiology Reports (2018)

  15. Article

    Open Access

    Analysis of cardiomyocyte clonal expansion during mouse heart development and injury

    The cellular mechanisms driving cardiac tissue formation remain poorly understood, largely due to the structural and functional complexity of the heart. It is unclear whether newly generated myocytes originate...

    Konstantina-Ioanna Sereti, Ngoc B. Nguyen, Paniz Kamran, Peng Zhao in Nature Communications (2018)

  16. Article

    Open Access

    Identification of a biosynthetic gene cluster for the polyene macrolactam sceliphrolactam in a Streptomyces strain isolated from mangrove sediment

    Streptomyces are a genus of Actinobacteria capable of producing structurally diverse natural products. Here we report the isolation and characterization of a biosynthetically talented Streptomyces (Streptomyces s...

    Zhen Jie Low, Li Mei Pang, Yichen Ding, Qing Wei Cheang in Scientific Reports (2018)

  17. No Access

    Article

    Validation of Bevacizumab Therapy Effect on Colon Cancer Subtypes by Using Whole Body Imaging in Mice

    Preclinical imaging offers a useful tool for monitoring cancer biological behavior and therapy in vivo without the necessity of animal surgery. The following paper describes our examination of tumor progress and ...

    Ivan Vuletic, Kedi Zhou, Hui Li, Huichen Bai, **angxi Meng in Molecular Imaging and Biology (2017)

  18. No Access

    Article

    Anti-bacterial properties of collagen-coated glass and polydimethylsiloxane substrates

    Attachments of three bacterial species, Escherichia coli, Staphylococcus aureus, and Pseudomonas aeruginosa on chemically modified glass slides and polydimethylsiloxane substrates were investigated with an attemp...

    Cheng Li, Yichen Ding, Shreyas Kuddannaya, Yilei Zhang in Journal of Materials Science (2017)

  19. Article

    Open Access

    Automated Segmentation of Light-Sheet Fluorescent Imaging to Characterize Experimental Doxorubicin-Induced Cardiac Injury and Repair

    This study sought to develop an automated segmentation approach based on histogram analysis of raw axial images acquired by light-sheet fluorescent imaging (LSFI) to establish rapid reconstruction of the 3-D z...

    René R. Sevag Packard, Kyung In Baek, Tyler Beebe, Nelson Jen in Scientific Reports (2017)

  20. Article

    Open Access

    Inductively powered wireless pacing via a miniature pacemaker and remote stimulation control system

    Pacemakers have existed for decades as a means to restore cardiac electrical rhythms. However, lead-related complications have remained a clinical challenge. While market-released leadless devices have address...

    Parinaz Abiri, Ahmad Abiri, René R. Sevag Packard, Yichen Ding in Scientific Reports (2017)

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