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  1. No Access

    Article

    Pretraining a foundation model for generalizable fluorescence microscopy-based image restoration

    Fluorescence microscopy-based image restoration has received widespread attention in the life sciences and has led to significant progress, benefiting from deep learning technology. However, most current task-...

    Chenxi Ma, Weimin Tan, Ruian He, Bo Yan in Nature Methods (2024)

  2. No Access

    Article

    Multi-Frame Cross-Channel Attention and Speaker Diarization Based Speaker-Attributed Automatic Speech Recognition System for Multi-Channel Multi-Party Meeting Transcription

    This paper describes a speaker-attributed automatic speech recognition (SA-ASR) system submitted to the multi-channel multi-party meeting transcription challenge, which aims to address the “who spoke what” pro...

    Luzhen Xu 许露真, Haoyin Yan 严浩尹, Maokui He 何茂奎 in Journal of Shanghai Jiaotong University (S… (2024)

  3. No Access

    Article

    Age-related noncanonical TRMT6–TRMT61A signaling impairs hematopoietic stem cells

    Aged hematopoietic stem cells (HSCs) exhibit compromised reconstitution capacity and differentiation bias toward myeloid lineages. However, the molecular mechanism behind HSC aging remains largely unknown. In ...

    Hanqing He, Yuqian Wang, **aoting Zhang, **aoyu Li, Chao Liu, Dingfei Yan in Nature Aging (2024)

  4. Article

    Open Access

    Differentiated genomic footprints suggest isolation and long-distance migration of Hmong-Mien populations

    The underrepresentation of Hmong-Mien (HM) people in Asian genomic studies has hindered our comprehensive understanding of the full landscape of their evolutionary history and complex trait architecture. South...

    Guanglin He, Peixin Wang, **g Chen, Yan Liu, Yuntao Sun, Rong Hu in BMC Biology (2024)

  5. No Access

    Article

    Phenylalanine diminishes M1 macrophage inflammation

    Emerging evidence suggests that amino acids dictate the effector functions of immune cells; however, whether and how phenylalanine (Phe) orchestrates the polarization of macrophages is not understood. Here, we...

    Qingzhuo Zhang, Siyuan Chen, Yan Guo, Fang He, Jian Fu in Science China Life Sciences (2023)

  6. Article

    Open Access

    Association between oral microbial dysbiosis and poor functional outcomes in stroke-associated pneumonia patients

    Despite advances in our understanding of the critical role of the microbiota in stroke patients, the oral microbiome has rarely been reported to be associated with stroke-associated pneumonia (SAP). We sought ...

    Yueran Ren, **gru Liang, **ao Li, Yiting Deng, San** Cheng in BMC Microbiology (2023)

  7. Article

    Open Access

    The complete and fully-phased diploid genome of a male Han Chinese

    Since the release of the complete human genome, the priority of human genomic study has now been shifting towards closing gaps in ethnic diversity. Here, we present a fully phased and well-annotated diploid hu...

    Chentao Yang, Yang Zhou, Yanni Song, Dongya Wu, Yan Zeng, Lei Nie in Cell Research (2023)

  8. No Access

    Article

    Enhanced Tribological Performance of Diamond Films by Utilizing DLC and DLC-H Top Layers

    High-performance diamond films are highly demanded on tool surfaces for wire-drawing and mechanical sealing applications. Herein, this work aims at enhancing the tribological performance of chemical vapor depo...

    Xuelin Lei 雷学林, Ying Yan 严 莹, Hang Zhang 张 航 in Journal of Shanghai Jiaotong University (S… (2023)

  9. No Access

    Article

    AIWW: a new nutrition-screening tool for the oncologic population

    Malnutrition is a common comorbidity among patients with cancer. However, no nutrition-screening tool has been recognized in this population. A quick and easy screening tool for nutrition with high sensitivity...

    Yi-Zhong Ge, Zhen-Ming Fu, Qi Zhang, Meng-Meng Song in Science China Life Sciences (2023)

  10. Article

    Biomarkers of aging

    Aging biomarkers are a combination of biological parameters to (i) assess age-related changes, (ii) track the physiological aging process, and (iii) predict the transition into a pathological status. Although ...

    Hainan Bao, Jiani Cao, Mengting Chen, Min Chen, Wei Chen in Science China Life Sciences (2023)

  11. Article

    Open Access

    Lack of adipocyte IP3R1 reduces diet-induced obesity and greatly improves whole-body glucose homeostasis

    The normal function of skeletal muscle and adipose tissue ensures whole-body glucose homeostasis. Ca2+ release channel inositol 1,4,5-trisphosphate receptor 1 (IP3R1) plays a vital role in regulating diet-induced...

    **n Zhang, Lu Wang, Yubo Wang, Linjuan He, Doudou Xu, Enfa Yan in Cell Death Discovery (2023)

  12. Article

    Open Access

    Metagenomic and machine learning-aided identification of biomarkers driving distinctive Cd accumulation features in the root-associated microbiome of two rice cultivars

    Develo** low-cadmium (Cd) rice cultivars has emerged as a promising avenue for food safety in Cd-contaminated farmlands. The root-associated microbiomes of rice have been shown to enhance rice growth and all...

    Zhongyi Cheng, Qiang Zheng, Jiachun Shi, Yan He, Xueling Yang in ISME Communications (2023)

  13. Article

    Open Access

    Gut microbiome dysregulation drives bone damage in broiler tibial dyschondroplasia by disrupting glucose homeostasis

    Tibial dyschondroplasia (TD) with multiple incentives is a metabolic skeletal disease that occurs in fast-growing broilers. Perturbations in the gut microbiota (GM) have been shown to affect bone homoeostasis,...

    Ting-ting Xu, Pan Chen, Chao-dong Zhang, Aftab Shaukat in npj Biofilms and Microbiomes (2023)

  14. No Access

    Article

    Hypothalamic Grb10 enhances leptin signalling and promotes weight loss

    Leptin acts on hypothalamic neurons expressing agouti-related protein (AgRP) or pro-opiomelanocortin (POMC) to suppress appetite and increase energy expenditure, but the intracellular mechanisms that modulate ...

    Hailan Liu, Yang He, Juli Bai, Chuanhai Zhang, Feng Zhang in Nature Metabolism (2023)

  15. No Access

    Article

    High-plex imaging of RNA and proteins at subcellular resolution in fixed tissue by spatial molecular imaging

    Resolving the spatial distribution of RNA and protein in tissues at subcellular resolution is a challenge in the field of spatial biology. We describe spatial molecular imaging, a system that measures RNAs and...

    Shanshan He, Ruchir Bhatt, Carl Brown, Emily A. Brown in Nature Biotechnology (2022)

  16. Article

    Open Access

    Chromosome-level genome and population genomics reveal evolutionary characteristics and conservation status of Chinese indigenous geese

    Geese are herbivorous birds that play an essential role in the agricultural economy. We construct the chromosome-level genome of a Chinese indigenous goose (the **ngguo gray goose, XGG; Anser cygnoides) and analy...

    **g Ouyang, Sumei Zheng, Min Huang, Hongbo Tang, **aohui Qiu in Communications Biology (2022)

  17. Article

    Open Access

    Multiscale characterization reveals oligomerization dependent phase separation of primer-independent RNA polymerase nsp8 from SARS-CoV-2

    RNA replication and transcription machinery is an important drug target for fighting against coronavirus. Non-structure protein nsp8 was proposed harboring primase activity. However, the RNA primer synthesis m...

    **xin Xu, **n Jiang, Yulong Zhang, Yan Dong, Changli Ma in Communications Biology (2022)

  18. No Access

    Article

    A clinically relevant model of focal embolic cerebral ischemia by thrombus and thrombolysis in rhesus monkeys

    Over decades of research into the treatment of stroke, nearly all attempts to translate experimental treatments from discovery in cells and rodents to use in humans have failed. The prevailing belief is that i...

    Di Wu, Jian Chen, Longfei Wu, Hangil Lee, **gfei Shi, Mo Zhang in Nature Protocols (2022)

  19. Article

    Open Access

    Effects of an inhibitor of the SHH signaling pathway on endometrial cells of patients with endometriosis

    Endometriosis is one of the most common gynecological diseases, and seriously reduces the quality of life of patients. However, the pathogenesis of this disease is unclear. Therefore, more studies are needed t...

    Yanan He, J. Wang, **nyan Jiang, Jianhua Gao, Yan Cheng in BMC Molecular and Cell Biology (2022)

  20. No Access

    Article

    Fertility conversion between cytoplasmic maintainer lines and restorer lines through molecular marker-assisted selection in pepper (Capsicum annuum L.)

    Pepper commercial hybrids, produced by an economical and efficient cytoplasmic male sterility (CMS)/restorer-of-fertility (Rf) system, have been widely used in production because of their strong heterosis. Howeve...

    Fu-Sen Ren, Hai-Feng Yang, Yu-Shun Jiao, Rui-** Zhang, Zhi-Wei Guo in Biologia (2022)

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