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  1. Article

    Open Access

    A semi–supervised tensor regression model for siRNA efficacy prediction

    Short interfering RNAs (siRNAs) can knockdown target genes and thus have an immense impact on biology and pharmacy research. The key question of which siRNAs have high knockdown ability in siRNA research remai...

    Bui Ngoc Thang, Tu Bao Ho, Tatsuo Kanda in BMC Bioinformatics (2015)

  2. Article

    Open Access

    A nucleosomal approach to inferring causal relationships of histone modifications

    Histone proteins are subject to various posttranslational modifications (PTMs). Elucidating their functional relationships is crucial toward understanding many biological processes. Bayesian network (BN)-based...

    Ngoc Tu Le, Tu Bao Ho, Bich Hai Ho, Dang Hung Tran in BMC Genomics (2014)

  3. Article

    Open Access

    Sequence-dependent histone variant positioning signatures

    Nucleosome, the fundamental unit of chromatin, is formed by wrap** nearly 147bp of DNA around an octamer of histone proteins. This histone core has many variants that are different from each other by their b...

    Ngoc Tu Le, Tu Bao Ho, Bich Hai Ho in BMC Genomics (2010)

  4. Article

    Open Access

    Characterizing nucleosome dynamics from genomic and epigenetic information using rule induction learning

    Eukaryotic genomes are packaged into chromatin, a compact structure containing fundamental repeating units, the nucleosomes. The mobility of nucleosomes plays important roles in many DNA-related processes by r...

    Ngoc Tu Le, Tu Bao Ho, Dang Hung Tran in BMC Genomics (2009)

  5. Article

    Open Access

    Finding microRNA regulatory modules in human genome using rule induction

    MicroRNAs (miRNAs) are a class of small non-coding RNA molecules (20–24 nt), which are believed to participate in repression of gene expression. They play important roles in several biological processes (e.g. ...

    Dang Hung Tran, Kenji Satou, Tu Bao Ho in BMC Bioinformatics (2008)