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  1. Article

    Open Access

    The plant microbiota signature of the Anthropocene as a challenge for microbiome research

    One promise of the recently presented microbiome definition suggested that, in combination with unifying concepts and standards, microbiome research could be important for solving new challenges associated wit...

    Gabriele Berg, Tomislav Cernava in Microbiome (2022)

  2. Article

    Open Access

    Bog ecosystems as a playground for plant–microbe coevolution: bryophytes and vascular plants harbour functionally adapted bacteria

    Bogs are unique ecosystems inhabited by distinctive, coevolved assemblages of organisms, which play a global role for carbon storage, climate stability, water quality and biodiversity. To understand ecology an...

    Wisnu Adi Wicaksono, Tomislav Cernava, Christian Berg, Gabriele Berg in Microbiome (2021)

  3. Article

    Open Access

    Post-translational regulation of autophagy is involved in intra-microbiome suppression of fungal pathogens

    Microbiome interactions are important determinants for ecosystem functioning, stability, and health. In previous studies, it was often observed that bacteria suppress potentially pathogenic fungal species that...

    **g Wang, Chaoyun Xu, Qiming Sun, **rong Xu, Yunrong Chai, Gabriele Berg in Microbiome (2021)

  4. Article

    Open Access

    Antimicrobial-specific response from resistance gene carriers studied in a natural, highly diverse microbiome

    Antimicrobial resistance (AMR) is a major threat to public health. Microorganisms equipped with AMR genes are suggested to have partially emerged from natural habitats; however, this hypothesis remains inconcl...

    Wisnu Adi Wicaksono, Peter Kusstatscher, Sabine Erschen in Microbiome (2021)

  5. Article

    Open Access

    Correction to: Microbiome definition re-visited: old concepts and new challenges

    An amendment to this paper has been published and can be accessed via the original article.

    Gabriele Berg, Daria Rybakova, Doreen Fischer, Tomislav Cernava in Microbiome (2020)

  6. Article

    Open Access

    Microbiome definition re-visited: old concepts and new challenges

    The field of microbiome research has evolved rapidly over the past few decades and has become a topic of great scientific and public interest. As a result of this rapid growth in interest covering different fi...

    Gabriele Berg, Daria Rybakova, Doreen Fischer, Tomislav Cernava in Microbiome (2020)

  7. Article

    Open Access

    Microbiome-driven identification of microbial indicators for postharvest diseases of sugar beets

    Sugar loss due to storage rot has a substantial economic impact on the sugar industry. The gradual spread of saprophytic fungi such as Fusarium and Penicillium spp. during storage in beet clamps is an ongoing cha...

    Peter Kusstatscher, Christin Zachow, Karsten Harms, Johann Maier in Microbiome (2019)

  8. Article

    Open Access

    Seeds of native alpine plants host unique microbial communities embedded in cross-kingdom networks

    The plant microbiota is crucial for plant health and growth. Recently, vertical transmission of a beneficial core microbiota was identified for crop seeds, but for native plants, complementary mechanisms are a...

    Birgit Wassermann, Tomislav Cernava, Henry Müller, Christian Berg in Microbiome (2019)

  9. Article

    Open Access

    Enterobacteriaceae dominate the core microbiome and contribute to the resistome of arugula (Eruca sativa Mill.)

    Arugula is a traditional medicinal plant and popular leafy green today. It is mainly consumed raw in the Western cuisine and known to contain various bioactive secondary metabolites. However, arugula has been ...

    Tomislav Cernava, Armin Erlacher, Jung Soh, Christoph W. Sensen, Martin Grube in Microbiome (2019)

  10. Article

    Open Access

    Deciphering functional diversification within the lichen microbiota by meta-omics

    Recent evidence of specific bacterial communities extended the traditional concept of fungal-algal lichen symbioses by a further organismal kingdom. Although functional roles were already assigned to dominant ...

    Tomislav Cernava, Armin Erlacher, Ines Aline Aschenbrenner, Lisa Krug in Microbiome (2017)