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  1. Article

    Open Access

    A second generation framework for the analysis of microsatellites in expressed sequence tags and the development of EST-SSR markers for a conifer, Cryptomeria japonica

    Microsatellites or simple sequence repeats (SSRs) in expressed sequence tags (ESTs) are useful resources for genome analysis because of their abundance, functionality and polymorphism. The advent of commercial...

    Saneyoshi Ueno, Yoshinari Moriguchi, Kentaro Uchiyama, Tokuko U**o-Ihara… in BMC Genomics (2012)

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  2. No Access

    Article

    RIKEN Cassava Initiative: Establishment of a Cassava Functional Genomics Platform

    Cassava (Manihot esculenta Crantz) is an important tropical root crop that provides food security and income generation for many farmers. Cassava ranks as the third most important source of calories in the tropic...

    Yoshinori Utsumi, Tetsuya Sakurai, Yoshimi Umemura, Sarah Ayling… in Tropical Plant Biology (2012)

  3. Article

    Open Access

    Functional annotation of 19,841 Populus nigra full-length enriched cDNA clones

    Populus is one of favorable model plants because of its small genome. Structural genomics of Populus has reached a breakpoint as nucleotides of the entire genome have been determined. Reaching the post genome era...

    Tokihiko Nanjo, Tetsuya Sakurai, Yasushi Totoki, Atsushi Toyoda… in BMC Genomics (2007)

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  4. Article

    Open Access

    Identification of plant promoter constituents by analysis of local distribution of short sequences

    Plant promoter architecture is important for understanding regulation and evolution of the promoters, but our current knowledge about plant promoter structure, especially with respect to the core promoter, is ...

    Yoshiharu Y Yamamoto, Hiroyuki Ichida, Minami Matsui, Junichi Obokata… in BMC Genomics (2007)

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  5. No Access

    Article

    Monitoring expression profiles of Arabidopsis genes during cold acclimation and deacclimation using DNA microarrays

    A comparative analysis of gene expression profiles during cold acclimation and deacclimation is necessary to elucidate the molecular mechanisms of cold stress responses in higher plants. We analyzed gene expre...

    Youko Oono, Motoaki Seki, Masakazu Satou, Kei Iida… in Functional & Integrative Genomics (2006)

  6. No Access

    Chapter

    Transcriptome analysis in abiotic stress conditions in higher plants

    Drought, high salinity, and low temperature are major environmental factors that limit plant productivity. Plants respond and adapt to these stresses in order to survive. Recent molecular and genetic studies h...

    Motoaki Seki, Ayako Kamei, Masakazu Satou… in Plant Responses to Abiotic Stress (2004)

  7. No Access

    Article

    Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray

    Motoaki Seki, Junko Ishida, Mari Narusaka, Miki Fujita… in Functional & Integrative Genomics (2002)

  8. No Access

    Article

    Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray

    Full-length cDNAs are essential for functional analysis of plant genes. Recently, cDNA microarray analysis has been developed for quantitative analysis of global and simultaneous analysis of expression profil...

    Motoaki Seki, Junko Ishida, Mari Narusaka, Miki Fujita… in Functional & Integrative Genomics (2002)