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  1. Article

    Open Access

    Shaoxia: a web-based interactive analysis platform for single cell RNA sequencing data

    In recent years, Single-cell RNA sequencing (scRNA-seq) is increasingly accessible to researchers of many fields. However, interpreting its data demands proficiency in multiple programming languages and bioinf...

    Weideng Wei, **aoqiang **a, Taiwen Li, Qianming Chen, **aodong Feng in BMC Genomics (2024)

  2. Article

    Publisher Correction: Landscape of B cell immunity and related immune evasion in human cancers

    An amendment to this paper has been published and can be accessed via a link at the top of the paper.

    **hao Hu, Jian Zhang, ** Wang, **gxin Fu, Taiwen Li, **aoqi Zheng in Nature Genetics (2019)

  3. No Access

    Article

    Landscape of B cell immunity and related immune evasion in human cancers

    Tumor-infiltrating B cells are an important component in the microenvironment but have unclear anti-tumor effects. We enhanced our previous computational algorithm TRUST to extract the B cell immunoglobulin hy...

    **hao Hu, Jian Zhang, ** Wang, **gxin Fu, Taiwen Li, **aoqi Zheng in Nature Genetics (2019)

  4. No Access

    Article

    Ultrasensitive detection of TCR hypervariable-region sequences in solid-tissue RNA–seq data

    Bo Li, Taiwen Li, Binbin Wang, Ruoxu Dou, Jian Zhang, Jun S Liu in Nature Genetics (2017)

  5. Article

    Open Access

    Comprehensive analyses of tumor immunity: implications for cancer immunotherapy

    Understanding the interactions between tumor and the host immune system is critical to finding prognostic biomarkers, reducing drug resistance, and develo** new therapies. Novel computational methods are nee...

    Bo Li, Eric Severson, Jean-Christophe Pignon, Haoquan Zhao, Taiwen Li in Genome Biology (2016)

  6. No Access

    Article

    Landscape of tumor-infiltrating T cell repertoire of human cancers

    Shirley Liu, Jun Liu and colleagues present a computational method to infer the CDR3 sequences of tumor-infiltrating T cells from RNA-seq data. They apply the method to 9,142 samples across 29 cancer types and...

    Bo Li, Taiwen Li, Jean-Christophe Pignon, Binbin Wang, **zeng Wang in Nature Genetics (2016)