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  1. No Access

    Protocol

    Computational Deconvolution of Tumor-Infiltrating Immune Components with Bulk Tumor Gene Expression Data

    Tumor-infiltrating immune cells play critical roles in immune-mediated tumor rejection and/or progression, and are key targets of immunotherapies. Estimation of different immune subsets becomes increasingly im...

    Bo Li, Taiwen Li, Jun S. Liu, X. Shirley Liu in Bioinformatics for Cancer Immunotherapy (2020)

  2. Article

    Publisher Correction: Landscape of B cell immunity and related immune evasion in human cancers

    An amendment to this paper has been published and can be accessed via a link at the top of the paper.

    **hao Hu, Jian Zhang, ** Wang, **gxin Fu, Taiwen Li, **aoqi Zheng… in Nature Genetics (2019)

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  3. No Access

    Article

    Landscape of B cell immunity and related immune evasion in human cancers

    Tumor-infiltrating B cells are an important component in the microenvironment but have unclear anti-tumor effects. We enhanced our previous computational algorithm TRUST to extract the B cell immunoglobulin hy...

    **hao Hu, Jian Zhang, ** Wang, **gxin Fu, Taiwen Li, **aoqi Zheng… in Nature Genetics (2019)

  4. No Access

    Article

    Ultrasensitive detection of TCR hypervariable-region sequences in solid-tissue RNA–seq data

    Bo Li, Taiwen Li, Binbin Wang, Ruoxu Dou, Jian Zhang, Jun S Liu… in Nature Genetics (2017)

  5. No Access

    Article

    Landscape of tumor-infiltrating T cell repertoire of human cancers

    Shirley Liu, Jun Liu and colleagues present a computational method to infer the CDR3 sequences of tumor-infiltrating T cells from RNA-seq data. They apply the method to 9,142 samples across 29 cancer types and...

    Bo Li, Taiwen Li, Jean-Christophe Pignon, Binbin Wang, **zeng Wang… in Nature Genetics (2016)