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Protein annotation by EBIMed

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  1. Article

    Open Access

    Rapid identification of PAX2/5/8 direct downstream targets in the otic vesicle by combinatorial use of bioinformatics tools

    The pax2/5/8 genes belonging to the PAX family of transcription factors are key developmental regulators that are involved in the patterning of various embryonic tissues. More particularly, their function in inne...

    Mirana Ramialison, Baubak Bajoghli, Narges Aghaallaei, Laurence Ettwiller… in Genome Biology (2008)

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  2. Article

    Open Access

    Integrating protein-protein interactions and text mining for protein function prediction

    Functional annotation of proteins remains a challenging task. Currently the scientific literature serves as the main source for yet uncurated functional annotations, but curation work is slow and expensive. Au...

    Samira Jaeger, Sylvain Gaudan, Ulf Leser, Dietrich Rebholz-Schuhmann in BMC Bioinformatics (2008)

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  3. Article

    Open Access

    Assessment of disease named entity recognition on a corpus of annotated sentences

    In recent years, the recognition of semantic types from the biomedical scientific literature has been focused on named entities like protein and gene names (PGNs) and gene ontology terms (GO terms). Other sema...

    Antonio Jimeno, Ernesto Jimenez-Ruiz, Vivian Lee, Sylvain Gaudan… in BMC Bioinformatics (2008)

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