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  1. Article

    Open Access

    A rare variant analysis framework using public genotype summary counts to prioritize disease-predisposition genes

    Sequencing cases without matched healthy controls hinders prioritization of germline disease-predisposition genes. To circumvent this problem, genotype summary counts from public data sets can serve as control...

    Wenan Chen, Shuoguo Wang, Saima Sultana Tithi, David W. Ellison in Nature Communications (2022)

  2. Article

    Open Access

    Chemotherapy induces dynamic immune responses in breast cancers that impact treatment outcome

    To elucidate the effects of neoadjuvant chemotherapy (NAC), we conduct whole transcriptome profiling coupled with histopathology analyses of a longitudinal breast cancer cohort of 146 patients including 110 pa...

    Yeon Hee Park, Samir Lal, Jeong Eon Lee, Yoon-La Choi, Ji Wen in Nature Communications (2020)

  3. Article

    Open Access

    The genomic landscape of pediatric myelodysplastic syndromes

    Myelodysplastic syndromes (MDS) are uncommon in children and have a poor prognosis. In contrast to adult MDS, little is known about the genomic landscape of pediatric MDS. Here, we describe the somatic and ger...

    Jason R. Schwartz, **g Ma, Tamara Lamprecht, Michael Walsh in Nature Communications (2017)