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  1. Article

    Open Access

    Mutant p53 gains oncogenic functions through a chromosomal instability-induced cytosolic DNA response

    Inactivating TP53 mutations leads to a loss of function of p53, but can also often result in oncogenic gain-of-function (GOF) of mutant p53 (mutp53) proteins which promotes tumor development and progression. The ...

    Mei Zhao, Tianxiao Wang, Frederico O. Gleber-Netto, Zhen Chen in Nature Communications (2024)

  2. Article

    Open Access

    Tumor microenvironment: barrier or opportunity towards effective cancer therapy

    Tumor microenvironment (TME) is a specialized ecosystem of host components, designed by tumor cells for successful development and metastasis of tumor. With the advent of 3D culture and advanced bioinformatic ...

    Aadhya Tiwari, Rakesh Trivedi, Shiaw-Yih Lin in Journal of Biomedical Science (2022)

  3. Article

    Open Access

    Role of DNA repair defects in predicting immunotherapy response

    Defect in DNA damage response (DDR) is a common feature of cancer cells, which regulates tumor growth and therapeutic response. Recently, the approval of immune checkpoint blockade (ICB) for tumors with defect...

    **g Zhang, David J. H. Shih, Shiaw-Yih Lin in Biomarker Research (2020)

  4. Article

    Open Access

    PBRM1 loss defines a nonimmunogenic tumor phenotype associated with checkpoint inhibitor resistance in renal carcinoma

    A non-immunogenic tumor microenvironment (TME) is a significant barrier to immune checkpoint blockade (ICB) response. The impact of Polybromo-1 (PBRM1) on TME and response to ICB in renal cell carcinoma (RCC) rem...

    **an-De Liu, Wen Kong, Christine B. Peterson, Daniel J. McGrail in Nature Communications (2020)

  5. No Access

    Article

    Nucleostemin reveals a dichotomous nature of genome maintenance in mammary tumor progression

    A defective homologous recombination (HR) repair program increases tumor incidence as well as providing a survival advantage in patients with breast and ovarian cancers. Here we hypothesize that the tumor-prom...

    Tao Lin, Tsung-Chin Lin, Daniel J. McGrail, Parnit K. Bhupal, Yi-Hsuan Ku in Oncogene (2019)

  6. Article

    Author Correction: Local generation of fumarate promotes DNA repair through inhibition of histone H3 demethylation

    In the version of this Article originally published, the authors mistakenly used the same images for three different time points in Fig. 2d: images for 24 h post-IR WT were also used for 0 h post-IR WT (top ro...

    Yuhui Jiang, Xu Qian, Jianfeng Shen, Yugang Wang, **njian Li in Nature Cell Biology (2018)

  7. Article

    Open Access

    Multi-omics analysis reveals neoantigen-independent immune cell infiltration in copy-number driven cancers

    To realize the full potential of immunotherapy, it is critical to understand the drivers of tumor infiltration by immune cells. Previous studies have linked immune infiltration with tumor neoantigen levels, bu...

    Daniel J. McGrail, Lorenzo Federico, Yongsheng Li, Hui Dai in Nature Communications (2018)

  8. Article

    Open Access

    Improved prediction of PARP inhibitor response and identification of synergizing agents through use of a novel gene expression signature generation algorithm

    Despite rapid advancement in generation of large-scale microarray gene expression datasets, robust multigene expression signatures that are capable of guiding the use of specific therapies have not been routin...

    Daniel J. McGrail, Curtis Chun-Jen Lin in npj Systems Biology and Applications (2017)

  9. No Access

    Reference Work Entry In depth

    BRIT1 Gene

    Deborah Jackson-Bernitsas, Kaiyi Li, Shiaw-Yih Lin in Encyclopedia of Cancer (2017)

  10. No Access

    Article

    Local generation of fumarate promotes DNA repair through inhibition of histone H3 demethylation

    Histone methylation regulates DNA repair. However, the mechanisms that underlie the regulation of histone methylation during this repair remain to be further defined. Here, we show that exposure to ionizing ra...

    Yuhui Jiang, Xu Qian, Jianfeng Shen, Yugang Wang, **njian Li in Nature Cell Biology (2015)

  11. Article

    Tyrosine 370 phosphorylation of ATM positively regulates DNA damage response

    Ataxia telangiectasia mutated (ATM) mediates DNA damage response by controling irradiation-induced foci formation, cell cycle checkpoint, and apoptosis. However, how upstream signaling regulates ATM is not com...

    Hong-Jen Lee, Li Lan, Guang Peng, Wei-Chao Chang, Ming-Chuan Hsu in Cell Research (2015)

  12. No Access

    Living Reference Work Entry In depth

    BRIT1 Gene

    Deborah Jackson-Bernitsas, Kaiyi Li, Shiaw-Yih Lin in Encyclopedia of Cancer

  13. No Access

    Article

    Genome-wide transcriptome profiling of homologous recombination DNA repair

    Homologous recombination (HR) repair deficiency predisposes to cancer development, but also sensitizes cancer cells to DNA damage-inducing therapeutics. Here we identify an HR defect (HRD) gene signature that ...

    Guang Peng, Curtis Chun-Jen Lin, Wei Mo, Hui Dai, Yun-Yong Park in Nature Communications (2014)

  14. Article

    Open Access

    Tumor dormancy: potential therapeutic target in tumor recurrence and metastasis prevention

    In past decades, cancer patient survival has been improved with earlier detection and advancements in therapy. However, many patients who exhibit no clinical symptoms after frontline therapy subsequently suffe...

    Sih-han Wang, Shiaw-Yih Lin in Experimental Hematology & Oncology (2013)

  15. No Access

    Reference Work Entry In depth

    BRIT1 Gene

    Deborah Jackson-Bernitsas, Shiaw-Yih Lin, Kaiyi Li in Encyclopedia of Cancer (2011)

  16. No Access

    Article

    BRIT1/MCPH1 links chromatin remodelling to DNA damage response

    Chromatin decondensation is required for repair factors to access damaged DNA. BRIT1/MCPH1, a damage response protein mutated in microcephaly, recruits the chromatin remodelling complex SWI/SNF to sites of DNA...

    Guang Peng, Eun-Kyoung Yim, Hui Dai, Andrew P. Jackson in Nature Cell Biology (2009)

  17. No Access

    Article

    DNA Damage Response Pathways in Tumor Suppression and Cancer Treatment

    Mammalian cells are frequently at risk of DNA damage from multiple sources. Accordingly, cells have evolved the DNA damage response (DDR) pathways to monitor the integrity of their genome. Conceptually, DDR pa...

    Yulong Liang, Shiaw-Yih Lin, F. Charles Brunicardi, John Goss in World Journal of Surgery (2009)

  18. No Access

    Article

    TRF2 functions as a protein hub and regulates telomere maintenance by recognizing specific peptide motifs

    TRF2 is a member of the telosome/shelterin complex, which helps maintain telomere integrity. Using an oriented peptide library based on a previously identified TRF2-interaction region to define a consensus seq...

    Hyeung Kim, Ok-Hee Lee, Huawei **n, Liuh-Yow Chen in Nature Structural & Molecular Biology (2009)

  19. No Access

    Reference Work Entry In depth

    BRIT1 Gene

    Deborah Jackson-Bernitsas, Kaiyi Li, Shiaw-Yih Lin in Encyclopedia of Cancer (2009)

  20. No Access

    Article

    Localizing the EGF receptor - Reply

    Lilly Bourguignon, Keng-hsueh Lan, Patrick Singleton, Shiaw-Yih Lin in Nature Cell Biology (2002)

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