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  1. Article

    Open Access

    Genomic insight into the origin, domestication, dispersal, diversification and human selection of Tartary buckwheat

    Tartary buckwheat, Fagopyrum tataricum, is a pseudocereal crop with worldwide distribution and high nutritional value. However, the origin and domestication history of this crop remain to be elucidated.

    Yuqi He, Kaixuan Zhang, Yaliang Shi, Hao Lin, Xu Huang, **ang Lu in Genome Biology (2024)

  2. Article

    Open Access

    The therapeutic value of bifidobacteria in cardiovascular disease

    There has been an increase in cardiovascular morbidity and mortality over the past few decades, making cardiovascular disease (CVD) the leading cause of death worldwide. However, the pathogenesis of CVD is mul...

    Jia Tang, Yumeng Wei, Chao Pi, Wenwu Zheng, Ying Zuo in npj Biofilms and Microbiomes (2023)

  3. Article

    Open Access

    The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment

    Vestimentifera (Polychaeta, Siboglinidae) is a taxon of deep-sea worm-like animals living in deep-sea hydrothermal vents, cold seeps, and organic falls. The morphology and lifespan of Ridgeia piscesae, which is t...

    Muhua Wang, Lingwei Ruan, Meng Liu, Zixuan Liu, Jian He, Long Zhang in BMC Genomics (2023)

  4. Article

    Open Access

    Integrated analysis of microRNAs, circular RNAs, long non-coding RNAs, and mRNAs revealed competing endogenous RNA networks involved in brown adipose tissue whitening in rabbits

    The brown adipose tissue (BAT) is a target for treating obesity. BAT losses thermogenic capacity and gains a “white adipose tissue-like” phenotype (“BAT whitening”) under thermoneutral environments, which is a...

    Kun Du, Xue Bai, Li Chen, Yu Shi, Hao-ding Wang, Ming-cheng Cai in BMC Genomics (2022)

  5. Article

    Open Access

    Identifying pleiotropic variants and candidate genes for fertility and reproduction traits in Holstein cattle via association studies based on imputed whole-genome sequence genotypes

    Genetic progress for fertility and reproduction traits in dairy cattle has been limited due to the low heritability of most indicator traits. Moreover, most of the quantitative trait loci (QTL) and candidate g...

    Shi-Yi Chen, Flavio S. Schenkel, Ana L. P. Melo, Hinayah R. Oliveira in BMC Genomics (2022)

  6. Article

    Open Access

    Identification of ARF family in blueberry and its potential involvement of fruit development and pH stress response

    Auxin responsive factor (ARF) family is one of core components in auxin signalling pathway, which governs diverse developmental processes and stress responses. Blueberry is an economically important berry-bear...

    Xuyan Li, **aoyi Zhang, Tianran Shi, Min Chen, Chengguo Jia, **gying Wang in BMC Genomics (2022)

  7. Article

    Open Access

    The relationship between polymorphism of insulin-like growth factor I gene and susceptibility to type 2 diabetes in Uygur population, **njiang, China

    Type 2 diabetes (T2DM) susceptibility varies among different populations and is affected by gene single nucleotide polymorphism (SNP). Insulin-like growth factor (IGF)-1 gene, which has many SNP loci, is involved...

    Tingting Wang, Gulixiati Maimaitituersun, Haonan Shi, Cheng Chen, Qi Ma in Genes & Genomics (2022)

  8. Article

    Open Access

    Modular control of multiple pathways of Corynebacterium glutamicum for 5-aminolevulinic acid production

    5-aminolevulinic acid (ALA) has broad potential applications in the medical, agricultural and food industries. Several strategies have been implemented successfully to try to improve ALA synthesis. Nonetheless...

    Fanglan Ge, **aokun Li, Qingrong Ge, Di Zhu, Wei Li, Fenghui Shi in AMB Express (2021)

  9. Article

    Open Access

    Identification of a novel immunological epitope on Hexon of fowl adenovirus serotype 4

    Fowl adenovirus serotype 4 (FAdV-4), the causative agent of hepatitis-hydropericardium syndrome (HHS), distributed widely in the poultry farms in China. Hexon is one of the major capsid proteins associated wit...

    **gyi Liu, Nan Mei, Yaling Wang, **n** Shi, Hongjun Chen in AMB Express (2021)

  10. Article

    Open Access

    Genome-wide identification and expression profile analysis of trihelix transcription factor family genes in response to abiotic stress in sorghum [Sorghum bicolor (L.) Moench]

    Transcription factors, including trihelix transcription factors, play vital roles in various growth and developmental processes and in abiotic stress responses in plants. The trihelix gene has been systematically...

    Kuiyin Li, Lili Duan, Yubo Zhang, Miaoxiao Shi, Songshu Chen, Mingfang Yang in BMC Genomics (2021)

  11. Article

    Open Access

    Correction to: Genome-wide development of insertiondeletion (InDel) markers for Cannabis and its uses in genetic structure analysis of Chinese germplasm and sex-linked marker identification

    Gen Pan, Zheng Li, Siqi Huang, Jie Tao, Yaliang Shi, Anguo Chen, Jianjun Li in BMC Genomics (2021)

  12. Article

    Open Access

    Genome-wide development of insertion-deletion (InDel) markers for Cannabis and its uses in genetic structure analysis of Chinese germplasm and sex-linked marker identification

    Cannabis sativa L., a dioecious plant derived from China, demonstrates important medicinal properties and economic value worldwide. Cannabis properties have been usually harnessed depending on the sex of the plan...

    Gen Pan, Zheng Li, Siqi Huang, Jie Tao, Yaliang Shi, Anguo Chen, Jianjun Li in BMC Genomics (2021)

  13. No Access

    Article

    Genomewide comparative analysis of codon usage bias in three sequenced Jatropha curcas

    Jatropha curcas has recently emerged as an important bioenergy plant which is an ideal alternative for fossil fuels. It is particularly significant to analyse the codon usage bias (CUB) and further evaluate the i...

    ZHANJUN WANG, GUIYI WANG, QIANWEN CAI, YAO JIANG, CHENCHEN WANG in Journal of Genetics (2021)

  14. Article

    Open Access

    A reappraisal of the phylogenetic placement of the Aquilegia whole-genome duplication

    The accurate placement of an ancient whole-genome duplication (WGD) in relation to the lineage divergence is important. Here, we re-investigated the Aquilegia coerulea WGD and found it is more likely lineage-spec...

    Tao Shi, **ming Chen in Genome Biology (2020)

  15. No Access

    Article

    Genome-wide identification and characterization of long non-coding RNAs during differentiation of visceral preadipocytes in rabbit

    Emerging evidence suggests that long non-coding RNAs (lncRNAs) are critical regulators of diverse biological processes, including adipogenesis. Despite being considered an ideal animal model for studying adipo...

    Kun Du, Guo-Ze Wang, An-yong Ren, Ming-cheng Cai in Functional & Integrative Genomics (2020)

  16. Article

    Open Access

    The draft genome of horseshoe crab Tachypleus tridentatus reveals its evolutionary scenario and well-developed innate immunity

    Horseshoe crabs are ancient marine arthropods with a long evolutionary history extending back approximately 450 million years, which may benefit from their innate immune systems. However, the genetic mechanism...

    Yan Zhou, Yuan Liang, Qing Yan, Liang Zhang, Dianbao Chen, Lingwei Ruan in BMC Genomics (2020)

  17. No Access

    Chapter

    Current Progress on Endophytic Microbial Dynamics on Dendrobium Plants

    For decades, Dendrobium plant-associated fungal endophytes have been studied as “bio-factories” of multifunctional bioactive compounds. Among the crude extracts and their substances purified from the fungal bioma...

    Surendra Sarsaiya, **gshan Shi, Jishuang Chen in Fungal Biotechnology and Bioengineering (2020)

  18. No Access

    Article

    Bacterial community in cold and alkaline environments of Hoh **l basin in Qinghai–Tibet Plateau and isolation of potential sources of microbiota

    The Hoh **l basin is the largest Cenozoic sedimentary basin in the Qinghai–Tibet Plateau (QTP) with an average altitude of above 5000 m. It is also the coldest region in the QTP. However, due to the difficulty...

    Rui **ng, Qing-bo Gao, Fa-qi Zhang, Jiu-li Wang, Shi-long Chen in Annals of Microbiology (2019)

  19. Article

    Open Access

    Flatfish monophyly refereed by the relationship of Psettodes in Carangimorphariae

    The monophyly of flatfishes has not been supported in many molecular phylogenetic studies. The monophyly of Pleuronectoidei, which comprises all but one family of flatfishes, is broadly supported. However, the...

    Wei Shi, Shixi Chen, **aoyu Kong, Lizhen Si, Li Gong, Yanchun Zhang, Hui Yu in BMC Genomics (2018)

  20. No Access

    Article

    Genetic engineering to alter carbon flux for various higher alcohol productions by Saccharomyces cerevisiae for Chinese Baijiu fermentation

    Higher alcohols significantly influence the quality and flavor profiles of Chinese Baijiu. ILV1-encoded threonine deaminase, LEU1-encoded α-isopropylmalate dehydrogenase, and LEU2-encoded β-isopropylmalate dehydr...

    Wei Li, Shi-Jia Chen, Jian-Hui Wang in Applied Microbiology and Biotechnology (2018)

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