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  1. No Access

    Article

    Crop Straws with Contrasting C/N Ratios Affect the Organic Carbon Turnover and Its Net Sequestration Efficiency When Solely or Jointly Incorporated to a Fertilized Soil

    The quality (carbon to nitrogen ratio; C/N ratio) of crop residue affects the decomposition of soil organic carbon (SOC) due to the nutrient stoichiometry, which requires well-exploration especially on the dyn...

    **ushuang Li, Jianglan Shi, Juan Chen in Journal of Soil Science and Plant Nutrition (2024)

  2. No Access

    Article

    Sequence and epigenetic variations of R2R3-MYB transcription factors determine the diversity of taproot skin and flesh colors in different cultivated types of radish (Raphanus sativus L.)

    This study found that three paralogous R2R3-MYB transcription factors exhibit functional divergence among different subspecies and cultivated types in radish.

    Qingbiao Wang, Yan** Wang, **angyu Wu, Wenyu Shi in Theoretical and Applied Genetics (2024)

  3. Article

    Open Access

    Starfysh integrates spatial transcriptomic and histologic data to reveal heterogeneous tumor–immune hubs

    Spatially resolved gene expression profiling provides insight into tissue organization and cell–cell crosstalk; however, sequencing-based spatial transcriptomics (ST) lacks single-cell resolution. Current ST a...

    Siyu He, Yinuo **, Achille Nazaret, Lingting Shi, Xueer Chen in Nature Biotechnology (2024)

  4. Article

    Open Access

    Correction: Biochar amendments improve soil functionalities, microbial community and reduce Pokkah boeng disease of sugarcane

    Shakeel Ahmad, Xuexin Zhai, Mengrong Wang in Chemical and Biological Technologies in Ag… (2024)

  5. Article

    Open Access

    Biochar amendments improve soil functionalities, microbial community and reduce Pokkah boeng disease of sugarcane

    Biochar is mainly used to enhance soil fertility, microbial activity, improve plant performance and reduce disease incidence.

    Shakeel Ahmad, Xuexin Zhai, Mengrong Wang in Chemical and Biological Technologies in Ag… (2024)

  6. Article

    Open Access

    Genomic survey and expression analysis of LcARFs reveal multiple functions to somatic embryogenesis in Liriodendron

    Auxin response factors (ARFs) are critical transcription factors that mediate the auxin signaling pathway and are essential for regulating plant growth. However, there is a lack of understanding regarding the ARF

    Lin Xu, Ye Liu, Jiaji Zhang, Weihuang Wu, Zhaodong Hao, Shichan He in BMC Plant Biology (2024)

  7. No Access

    Article

    Waterlogging influences the physiology index and antioxidant enzyme activity in Cucurbita maxima and Cucurbita moschata

    Waterlogging is one of the major environmental challenges that can adversely impact squash growth, development, and productivity. Nevertheless, studies on the physiological changes of squash to waterlogging st...

    Kuan-Hung Lin, Shi-Peng Chen, Yi-Ru Su in Horticulture, Environment, and Biotechnolo… (2024)

  8. No Access

    Article

    Effects of root rot on microbial communities associated with goji berry (Lycium barbarum) in the Qaidam Basin, China

    Goji berry (Lycium barbarum) is an important cash crop in China. However, in recent years its yield has been threatened by root rot caused by fungal pathogens. The infection significantly alters the structure and...

    Zhilin Feng, Yuancan **ao, Na Li, Qingbo Gao in European Journal of Plant Pathology (2023)

  9. Article

    Open Access

    Phytosulfokine contributes to suspension culture of Cunninghamia lanceolata through its impact on redox homeostasis

    Suspension culture is widely used in the establishment of efficient plant regeneration systems, as well as in the mass production of plant secondary metabolites. However, the establishment of a suspension cult...

    Zhaodong Hao, **yu Shi, Hua Wu, Yiqing Yan, Kaifei **ng, Renhua Zheng in BMC Plant Biology (2023)

  10. Article

    Open Access

    The mRNA-lncRNA landscape of multiple tissues uncovers key regulators and molecular pathways that underlie heterosis for feed intake and efficiency in laying chickens

    Heterosis is routinely exploited to improve animal performance. However, heterosis and its underlying molecular mechanism for feed intake and efficiency have been rarely explored in chickens. Feed efficiency c...

    **gwei Yuan, **meng Zhao, Yanyan Sun, Yuanmei Wang in Genetics Selection Evolution (2023)

  11. No Access

    Article

    Root 1-aminocyclopropane-l-carboxylic acid (ACC) and rhizosphere ACC deaminase-producing bacteria affect apple root architecture under soil compaction stress

    Soil compaction inhibits root growth by limiting ethylene diffusion and often occurs in apple orchards. This study explored the mechanism of ethylene accumulation around apple roots in compacted soil from a mi...

    Jiaqi Li, Mi Xun, Junyuan Shi, Bing Chen, Yu** Cheng, Weiwei Zhang in Plant and Soil (2023)

  12. No Access

    Article

    Carbon and nutrient limitations of soil microbial metabolism in Quercus aquifolioides forest ecosystems along a precipitation gradient on the eastern Qinghai-Tibetan Plateau

    The response of soil microbial metabolic limitation in forest ecosystems to various factors remains poorly understood. The purpose of the study was to reveal the characteristics of microbial metabolic limitati...

    **angwen Cao, Zuomin Shi, Jian Chen, Shun Liu, Miaomiao Zhang, Miao Chen in Plant and Soil (2023)

  13. Article

    Open Access

    Correction: Uncovering the involvement of DoDELLA1-interacting proteins in development by characterizing the DoDELLA gene family in Dendrobium officinale

    Danqi Zeng, Can Si, Jaime A. Teixeira da Silva, Hongyu Shi, **g Chen in BMC Plant Biology (2023)

  14. No Access

    Article

    Exogenous 5-aminolevulinic acid promotes plant growth and salinity tolerance of grape rootstocks in coastal areas

    Salinity stress is a key factor affecting grape production in coastal areas. Two grape rootstock cultivars, ‘Beta’ (sensitive to salt stress) and ‘3309 C’ (resistant to salt stress), were used to investigate t...

    Weiwei Zheng, Yuting Tian, Haili Shi in Horticulture, Environment, and Biotechnolo… (2023)

  15. Article

    Open Access

    Genome-wide identification of the TIFY family reveals JAZ subfamily function in response to hormone treatment in Betula platyphylla

    The TIFY family is a plant-specific gene family and plays an important role in plant growth and development. But few reports have been reported on the phylogenetic analysis and gene expression profiling of TIF...

    Guanbin Lv, Rui Han, **g**g Shi, Kun Chen, Guifeng Liu, Qibin Yu in BMC Plant Biology (2023)

  16. Article

    Open Access

    Uncovering the involvement of DoDELLA1-interacting proteins in development by characterizing the DoDELLA gene family in Dendrobium officinale

    Gibberellins (GAs) are widely involved in plant growth and development. DELLA proteins are key regulators of plant development and a negative regulatory factor of GA. Dendrobium officinale is a valuable tradition...

    Danqi Zeng, Can Si, Jaime A. Teixeira da Silva, Hongyu Shi, **g Chen in BMC Plant Biology (2023)

  17. No Access

    Article

    Genome-wide association study of agronomic traits related to nitrogen use efficiency in wheat

    GWAS identified 347 QTLs associated with eight traits related to nitrogen use efficiency in a 389-count wheat panel. Four novel candidate transcription factor genes were verified using qRT-PCR.

    Huawei Shi, Ming Chen, Lifeng Gao, Yanxia Wang in Theoretical and Applied Genetics (2022)

  18. No Access

    Article

    Extracellular enzyme characteristics and microbial metabolic limitation in soil of subalpine forest ecosystems on the eastern Qinghai-Tibetan Plateau

    Subalpine forest ecosystems are sensitive to climate change, and extracellular enzyme activities and microbial metabolic limitation in soils are influenced by multiple factors including climate. The study aims...

    **angwen Cao, Zuomin Shi, Jian Chen, Shun Liu, Miaomiao Zhang, Miao Chen in Plant and Soil (2022)

  19. Article

    Open Access

    Comparative transcriptional analysis and identification of hub genes associated with wing differentiation of male in Aphis gossypii

    Aphis gossypii Glover (Hemiptera: Aphididae), a worldwide polyphagous phloem-feeding agricultural pest, has three wing morphs (winged parthenogenetic female, gynopara, and male) in the life cycle. The exclusive m...

    Ningbo HUANGFU, Qingyu SHI, Lulu CHEN, **aoyan MA in Journal of Cotton Research (2022)

  20. No Access

    Article

    AtMYB31 is a wax regulator associated with reproductive development in Arabidopsis

    AtMYB31, a R2R3MYB transcription factor that modulates wax biosynthesis in reproductive tissues, is involved in seed development in Arabidopsis.

    Lei Shi, Yuqin Chen, Jun Hong, Gaodian Shen, Lukas Schreiber, Hagai Cohen in Planta (2022)

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