3 Result(s)

Article

Erratum to: Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler

Samuel S. Shepard, Sarah Meno, Justin Bahl, Malania M. Wilson, John Barnes… in BMC Genomics (2016)

Article

Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler

Deep sequencing makes it possible to observe low-frequency viral variants and sub-populations with greater accuracy and sensitivity than ever before. Existing platforms can be used to multiplex a large number ...

Samuel S. Shepard, Sarah Meno, Justin Bahl, Malania M. Wilson, John Barnes… in BMC Genomics (2016)

Article

Evolution of genomic sequence inhomogeneity at mid-range scales

Mid-range inhomogeneity or MRI is the significant enrichment of particular nucleotides in genomic sequences extending from 30 up to several thousands of nucleotides. The best-known manifestation of MRI is CpG ...

Ashwin Prakash, Samuel S Shepard, Jie He, Benjamin Hart, Miao Chen… in BMC Genomics (2009)