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GWAS identifies candidate genes affecting water absorption in foxtail millet seeds

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  1. Article

    Open Access

    Comparative analysis of mitochondrial genomes of maize CMS-S subtypes provides new insights into male sterility stability

    Cytoplasmic male sterility (CMS) is a trait of economic importance in the production of hybrid seeds. In CMS-S maize, exerted anthers appear frequently in florets of field-grown female populations where only c...

    Senlin **ao, **gfeng **ng, Tiange Nie, Aiguo Su, Ruyang Zhang in BMC Plant Biology (2022)

  2. Article

    Open Access

    Target-oriented prioritization: targeted selection strategy by integrating organismal and molecular traits through predictive analytics in breeding

    Genomic prediction in crop breeding is hindered by modeling on limited phenotypic traits. We propose an integrative multi-trait breeding strategy via machine learning algorithm, target-oriented prioritization ...

    Wenyu Yang, Tingting Guo, **gyun Luo, Ruyang Zhang, Jiuran Zhao in Genome Biology (2022)

  3. Article

    Open Access

    A two-phase comprehensive NSCLC prognostic study identifies lncRNAs with significant main effect and interaction

    Long noncoding RNA (lncRNA) are involved in regulating physiological behaviors for various malignant tumors, including non-small-cell lung cancer (NSCLC). However, few studies comprehensively evaluated both ln...

    **g Zhu, **xing Guan, **nyu Ji, Yunjie Song in Molecular Genetics and Genomics (2022)

  4. Article

    Open Access

    The genetic mechanism of heterosis utilization in maize improvement

    In maize hybrid breeding, complementary pools of parental lines with reshuffled genetic variants are established for superior hybrid performance. To comprehensively decipher the genetics of heterosis, we prese...

    Yingjie **ao, Shuqin Jiang, Qian Cheng, **aqing Wang, Jun Yan in Genome Biology (2021)

  5. Article

    Open Access

    Stalk architecture, cell wall composition, and QTL underlying high stalk flexibility for improved lodging resistance in maize

    Stalk fracture caused by strong wind can severely reduce yields in maize. Stalks with higher stiffness and flexibility will exhibit stronger lodging resistance. However, stalk flexibility is rarely studied in ...

    **aqing Wang, Zi Shi, Ruyang Zhang, Xuan Sun, Jidong Wang, Shuai Wang in BMC Plant Biology (2020)

  6. Article

    Open Access

    CUBIC: an atlas of genetic architecture promises directed maize improvement

    Identifying genotype-phenotype links and causative genes from quantitative trait loci (QTL) is challenging for complex agronomically important traits. To accelerate maize gene discovery and breeding, we presen...

    Hai-Jun Liu, **aqing Wang, Yingjie **ao, **gyun Luo, Feng Qiao in Genome Biology (2020)

  7. Article

    Open Access

    shinyBN: an online application for interactive Bayesian network inference and visualization

    High-throughput technologies have brought tremendous changes to biological domains, and the resulting high-dimensional data has also posed enormous challenges to computational science. A Bayesian network is a ...

    Jia** Chen, Ruyang Zhang, Xuesi Dong, Lijuan Lin, Ying Zhu, Jieyu He in BMC Bioinformatics (2019)

  8. Article

    Open Access

    Map** of a major QTL for salt tolerance of mature field-grown maize plants based on SNP markers

    Salt stress significantly restricts plant growth and production. Maize is an important food and economic crop but is also a salt sensitive crop. Identification of the genetic architecture controlling salt tole...

    Meijie Luo, Yanxin Zhao, Ruyang Zhang, **feng **ng, Minxiao Duan in BMC Plant Biology (2017)

  9. Article

    Open Access

    Stability SCAD: a powerful approach to detect interactions in large-scale genomic study

    Evidence suggests that common complex diseases may be partially due to SNP-SNP interactions, but such detection is yet to be fully established in a high-dimensional small-sample (small-n-large-p) study. A numb...

    Jianwei Gou, Yang Zhao, Yongyue Wei, Chen Wu, Ruyang Zhang in BMC Bioinformatics (2014)