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  1. Article

    Open Access

    Solid-phase capture and profiling of open chromatin by spatial ATAC

    Current methods for epigenomic profiling are limited in their ability to obtain genome-wide information with spatial resolution. We introduce spatial ATAC, a method that integrates transposase-accessible chrom...

    Enric Llorens-Bobadilla, Margherita Zamboni, Maja Marklund in Nature Biotechnology (2023)

  2. Article

    Open Access

    Three-dimensional spatial transcriptomics uncovers cell type localizations in the human rheumatoid arthritis synovium

    The inflamed rheumatic joint is a highly heterogeneous and complex tissue with dynamic recruitment and expansion of multiple cell types that interact in multifaceted ways within a localized area. Rheumatoid ar...

    Sanja Vickovic, Denis Schapiro, Konstantin Carlberg in Communications Biology (2022)

  3. No Access

    Article

    High-definition spatial transcriptomics for in situ tissue profiling

    Spatial and molecular characteristics determine tissue function, yet high-resolution methods to capture both concurrently are lacking. Here, we developed high-definition spatial transcriptomics, which captures...

    Sanja Vickovic, Gökcen Eraslan, Fredrik Salmén, Johanna Klughammer in Nature Methods (2019)

  4. No Access

    Article

    Barcoded solid-phase RNA capture for Spatial Transcriptomics profiling in mammalian tissue sections

    Spatial resolution of gene expression enables gene expression events to be pinpointed to a specific location in biological tissue. Spatially resolved gene expression in tissue sections is traditionally analyze...

    Fredrik Salmén, Patrik L. Ståhl, Annelie Mollbrink in Nature Protocols (2018)

  5. No Access

    Article

    Spatially resolved transcriptome profiling in model plant species

    Understanding complex biological systems requires functional characterization of specialized tissue domains. However, existing strategies for generating and analysing high-throughput spatial expression profile...

    Stefania Giacomello, Fredrik Salmén, Barbara K. Terebieniec in Nature Plants (2017)