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  1. Article

    Open Access

    A hybrid computational strategy to address WGS variant analysis in >5000 samples

    The decreasing costs of sequencing are driving the need for cost effective and real time variant calling of whole genome sequencing data. The scale of these projects are far beyond the capacity of typical comp...

    Zhuoyi Huang, Navin Rustagi, Narayanan Veeraraghavan, Andrew Carroll in BMC Bioinformatics (2016)

  2. Article

    Open Access

    Assessing structural variation in a personal genome—towards a human reference diploid genome

    Characterizing large genomic variants is essential to expanding the research and clinical applications of genome sequencing. While multiple data types and methods are available to detect these structural varia...

    Adam C English, William J Salerno, Oliver A Hampton in BMC Genomics (2015)

  3. Article

    Open Access

    Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline

    Massively parallel DNA sequencing generates staggering amounts of data. Decreasing cost, increasing throughput, and improved annotation have expanded the diversity of genomics applications in research and clin...

    Jeffrey G Reid, Andrew Carroll, Narayanan Veeraraghavan in BMC Bioinformatics (2014)

  4. No Access

    Article

    FUSARIUM-ID v. 1.0: A DNA Sequence Database for Identifying Fusarium

    One of the greatest impediments to the study of Fusarium has been the incorrect and confused application of species names to toxigenic and pathogenic isolates, owing in large part to intrinsic limitations of morp...

    David M. Geiser, María del Mar Jiménez-Gasco in European Journal of Plant Pathology (2004)

  5. No Access

    Chapter

    FUSARIUM-ID v. 1.0: A DNA sequence database for identifying Fusarium

    One of the greatest impediments to the study of Fusarium has been the incorrect and confused application of species names to toxigenic and pathogenic isolates, owing in large part to intrinsic limitations of morp...

    David M. Geiser, María del Mar Jiménez-Gasco in Molecular Diversity and PCR-detection of T… (2004)