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  1. Article

    Open Access

    Cholangiocyte organoids to study drug-induced injury

    Drug induced bile duct injury is a frequently observed clinical problem leading to a wide range of pathological features. During the past decades, several agents have been identified with various postulated me...

    Zhenguo Wang, Chen **ng, Luc J. W. van der Laan in Stem Cell Research & Therapy (2024)

  2. Article

    Criteria for preclinical models of cholangiocarcinoma: scientific and medical relevance

    Cholangiocarcinoma (CCA) is a rare malignancy that develops at any point along the biliary tree. CCA has a poor prognosis, its clinical management remains challenging, and effective treatments are lacking. The...

    Diego F. Calvisi, Luke Boulter in Nature Reviews Gastroenterology & Hepatolo… (2023)

  3. No Access

    Living Reference Work Entry In depth

    Decellularized Tissue-Derived Materials for Organoid Culture

    Organoids are self-organizing, three-dimensionally cultured embryonic stem cells (ESC), induced pluripotent stem cells (iPSC), or adult stem cells (AdSC) that grow in a scaffold and have cell-cell and cell-mat...

    Jorke Willemse, Monique M. A. Verstegen in Handbook of the Extracellular Matrix

  4. Article

    Open Access

    Modelling immune cytotoxicity for cholangiocarcinoma with tumour-derived organoids and effector T cells

    Immunotherapy with immune checkpoint inhibitors (ICIs) is being explored to improve cholangiocarcinoma (CCA) therapy. However, it remains difficult to predict which ICI will be effective for individual patient...

    Guoying Zhou, Ruby Lieshout, Gilles S. van Tienderen in British Journal of Cancer (2022)

  5. Article

    Open Access

    Kinome profiling of cholangiocarcinoma organoids reveals potential druggable targets that hold promise for treatment stratification

    Cholangiocarcinoma is a rare but lethal cancer of the biliary tract. Its first-line treatment is currently restricted to chemotherapy, which provides limited clinical benefit. Kinase inhibitors targeting oncog...

    Ruby Lieshout, Alessandra V. S. Faria, Maikel P. Peppelenbosch in Molecular Medicine (2022)

  6. No Access

    Article

    Recapitulating lipid accumulation and related metabolic dysregulation in human liver-derived organoids

    Fatty liver disease has grown into a major global health burden, attributed to multi-factors including sedentary lifestyle, obesogenic diet and prevalence of metabolic disorders. The lack of robust experimenta...

    Ling Wang, Meng Li, Bingting Yu, Shaojun Shi, Jiaye Liu in Journal of Molecular Medicine (2022)

  7. Article

    Open Access

    Precancerous liver diseases do not cause increased mutagenesis in liver stem cells

    Inflammatory liver disease increases the risk of develo** primary liver cancer. The mechanism through which liver disease induces tumorigenesis remains unclear, but is thought to occur via increased mutagene...

    Luan Nguyen, Myrthe Jager, Ruby Lieshout, Petra E. de Ruiter in Communications Biology (2021)

  8. Article

    Open Access

    Long-term live imaging and multiscale analysis identify heterogeneity and core principles of epithelial organoid morphogenesis

    Organoids are morphologically heterogeneous three-dimensional cell culture systems and serve as an ideal model for understanding the principles of collective cell behaviour in mammalian organs during developme...

    Lotta Hof, Till Moreth, Michael Koch, Tim Liebisch, Marina Kurtz in BMC Biology (2021)

  9. Article

    Open Access

    Human extrahepatic and intrahepatic cholangiocyte organoids show region-specific differentiation potential and model cystic fibrosis-related bile duct disease

    The development, homeostasis, and repair of intrahepatic and extrahepatic bile ducts are thought to involve distinct mechanisms including proliferation and maturation of cholangiocyte and progenitor cells. Thi...

    Monique M. A. Verstegen, Floris J. M. Roos, Ksenia Burka in Scientific Reports (2020)

  10. Article

    Open Access

    Prime editing for functional repair in patient-derived disease models

    Prime editing is a recent genome editing technology using fusion proteins of Cas9-nickase and reverse transcriptase, that holds promise to correct the vast majority of genetic defects. Here, we develop prime e...

    Imre F. Schene, Indi P. Joore, Rurika Oka, Michal Mokry in Nature Communications (2020)

  11. Article

    Open Access

    LGR5 marks targetable tumor-initiating cells in mouse liver cancer

    Cancer stem cells (CSCs) or tumor-initiating cells (TICs) are thought to be the main drivers for disease progression and treatment resistance across various cancer types. Identifying and targeting these rare c...

    Wanlu Cao, Meng Li, Jiaye Liu, Shaoshi Zhang, Lisanne Noordam in Nature Communications (2020)

  12. Article

    Open Access

    Ultra-thin fluorocarbon foils optimise multiscale imaging of three-dimensional native and optically cleared specimens

    In three-dimensional light microscopy, the heterogeneity of the optical density in a specimen ultimately limits the achievable penetration depth and hence the three-dimensional resolution. The most direct appr...

    Katharina Hötte, Michael Koch, Lotta Hof, Marcel Tuppi, Till Moreth in Scientific Reports (2019)

  13. Article

    Open Access

    Lipid-mediated Wnt protein stabilization enables serum-free culture of human organ stem cells

    Wnt signalling proteins are essential for culture of human organ stem cells in organoids, but most Wnt protein formulations are poorly active in serum-free media. Here we show that purified Wnt3a protein is in...

    Nesrin Tüysüz, Louis van Bloois, Stieneke van den Brink in Nature Communications (2017)

  14. No Access

    Article

    Tissue-specific mutation accumulation in human adult stem cells during life

    Stem cells of the liver, colon and small intestine gradually accumulate mutations throughout life at a similar rate even though cancer incidence varies greatly among these tissues.

    Francis Blokzijl, Joep de Ligt, Myrthe Jager, Valentina Sasselli, Sophie Roerink in Nature (2016)