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  1. Article

    Open Access

    Newborn and child-like molecular signatures in older adults stem from TCR shifts across human lifespan

    CD8+ T cells provide robust antiviral immunity, but how epitope-specific T cells evolve across the human lifespan is unclear. Here we defined CD8+ T cell immunity directed at the prominent influenza epitope HLA-A...

    Carolien E. van de Sandt, Thi H. O. Nguyen, Nicholas A. Gherardin in Nature Immunology (2023)

  2. Article

    Open Access

    Robust and prototypical immune responses toward COVID-19 vaccine in First Nations peoples are impacted by comorbidities

    High-risk groups, including Indigenous people, are at risk of severe COVID-19. Here we found that Australian First Nations peoples elicit effective immune responses to COVID-19 BNT162b2 vaccination, including ...

    Wuji Zhang, Lukasz Kedzierski, Brendon Y. Chua, Mark Mayo in Nature Immunology (2023)

  3. Article

    VDJdb in the pandemic era: a compendium of T cell receptors specific for SARS-CoV-2

    Mikhail Goncharov, Dmitry Bagaev, Dmitrii Shcherbinin, Ivan Zvyagin in Nature Methods (2022)

  4. Article

    SARS-CoV-2 antigen exposure history shapes phenotypes and specificity of memory CD8+ T cells

    Although mRNA vaccine efficacy against severe coronavirus disease 2019 remains high, variant emergence has prompted booster immunizations. However, the effects of repeated exposures to severe acute respiratory...

    Anastasia A. Minervina, Mikhail V. Pogorelyy, Allison M. Kirk in Nature Immunology (2022)

  5. Article

    Open Access

    Exploring the pre-immune landscape of antigen-specific T cells

    Adaptive immune responses to newly encountered pathogens depend on the mobilization of antigen-specific clonotypes from a vastly diverse pool of naive T cells. Using recent advances in immune repertoire sequen...

    Mikhail V. Pogorelyy, Alla D. Fedorova, James E. McLaren, Kristin Ladell in Genome Medicine (2018)

  6. Article

    Open Access

    tcR: an R package for T cell receptor repertoire advanced data analysis

    The Immunoglobulins (IG) and the T cell receptors (TR) play the key role in antigen recognition during the adaptive immune response. Recent progress in next-generation sequencing technologies has provided an o...

    Vadim I. Nazarov, Mikhail V. Pogorelyy, Ekaterina A. Komech in BMC Bioinformatics (2015)