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Chapter and Conference Paper
On the Acceleration of Graph500: Characterizing PCIe Overheads with Multi-GPUs
Graphics Processing Units (GPUs) have fundamentally altered the approach to parallel computing despite the substantial PCIe overheads that they manifest. In order to maximize performance-per-dollar, systems ar...
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Article
Open AccessMulti-dimensional characterization of electrostatic surface potential computation on graphics processors
Calculating the electrostatic surface potential (ESP) of a biomolecule is critical towards understanding biomolecular function. Because of its quadratic computational complexity (as a function of the number of at...