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  1. Article

    Open Access

    RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis

    RNA-Seq is a well-established technology extensively used for transcriptome profiling, allowing the analysis of coding and non-coding RNA molecules. However, this technology produces a vast amount of data requ...

    Alessandro La Ferlita, Salvatore Alaimo, Sebastiano Di Bella in BMC Bioinformatics (2021)

  2. No Access

    Chapter and Conference Paper

    A Reliable Method to Remove Batch Effects Maintaining Group Differences in Lymphoma Methylation Case Study

    The amount of biological data is increasing and their analysis is becoming one of the most challenging topics in the information sciences. Before starting the analysis it is important to remove unwanted variab...

    Giulia Pontali, Luciano Cascione in Bioinformatics and Biomedical Engineering (2019)

  3. Article

    Open Access

    Correction to: cuRnet: an R package for graph traversing on GPU

    After publication of this supplement article [1], it was brought to our attention that reference 10 and reference 12 in the article are incorrect.

    Vincenzo Bonnici, Federico Busato, Stefano Aldegheri in BMC Bioinformatics (2018)

  4. Article

    Open Access

    cuRnet: an R package for graph traversing on GPU

    R has become the de-facto reference analysis environment in Bioinformatics. Plenty of tools are available as packages that extend the R functionality, and many of them target the analysis of biological network...

    Vincenzo Bonnici, Federico Busato, Stefano Aldegheri in BMC Bioinformatics (2018)

  5. No Access

    Chapter

    Elucidating the Role of microRNAs in Cancer Through Data Mining Techniques

    microRNAs (miRNAs) have been shown to play a crucial role in the most important biological processes and their dysregulation has been connected to a variety of diseases, including cancer. The number of computa...

    Luciano Cascione, Alfredo Ferro, Rosalba Giugno in MicroRNA Cancer Regulation (2013)