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  1. Article

    Open Access

    High-throughput and affordable genome-wide methylation profiling of circulating cell-free DNA by methylated DNA sequencing (MeD-seq) of LpnPI digested fragments

    DNA methylation detection in liquid biopsies provides a highly promising and much needed means for real-time monitoring of disease load in advanced cancer patient care. Compared to the often-used somatic mutat...

    Teoman Deger, Ruben G. Boers, Vanja de Weerd, Lindsay Angus in Clinical Epigenetics (2021)

  2. Article

    Open Access

    Optimizing Nanopore sequencing-based detection of structural variants enables individualized circulating tumor DNA-based disease monitoring in cancer patients

    Here, we describe a novel approach for rapid discovery of a set of tumor-specific genomic structural variants (SVs), based on a combination of low coverage cancer genome sequencing using Oxford Nanopore with a...

    Jose Espejo Valle-Inclan, Christina Stangl, Anouk C. de Jong in Genome Medicine (2021)