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The microbiome of a shell mound: ancient anthropogenic waste as a source of Streptomyces degrading recalcitrant polysaccharides

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  1. Article

    Open Access

    Genome comparison between clinical and environmental strains of Herbaspirillum seropedicae reveals a potential new emerging bacterium adapted to human hosts

    Herbaspirillum seropedicae is an environmental β-proteobacterium that is capable of promoting the growth of economically relevant plants through biological nitrogen fixation and phytohormone production. However, ...

    Helisson Faoro, Willian K. Oliveira, Vinicius A. Weiss in BMC Genomics (2019)

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    Open Access

    Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures

    pH is frequently reported as the main driver for prokaryotic community structure in soils. However, pH changes are also linked to “spillover effects” on other chemical parameters (e.g., availability of Al, Fe,...

    Daniel R. Lammel, Gabriel Barth, Otso Ovaskainen, Leonardo M. Cruz in Microbiome (2018)

  3. Article

    Open Access

    GFinisher: a new strategy to refine and finish bacterial genome assemblies

    Despite the development in DNA sequencing technology, improving the number and the length of reads, the process of reconstruction of complete genome sequences, the so called genome assembly, is still complex. ...

    Dieval Guizelini, Roberto T. Raittz, Leonardo M. Cruz in Scientific Reports (2016)

  4. Article

    Open Access

    The type III secretion system is necessary for the development of a pathogenic and endophytic interaction between Herbaspirillum rubrisubalbicans and Poaceae

    Herbaspirillum rubrisubalbicans was first identified as a bacterial plant pathogen, causing the mottled stripe disease in sugarcane. H. rubrisubalbicans can also associate with various plants of economic interest...

    Maria Augusta Schmidt, Eduardo Balsanelli, Hellison Faoro in BMC Microbiology (2012)