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8 Result(s)

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  1. No Access

    Chapter and Conference Paper

    Host Phenotype Prediction from Differentially Abundant Microbes Using RoDEO

    Metagenomics is the study of metagenomes which are mixtures of genetic material from several organisms. Metagenomic sequencing is increasingly used in human and animal health, food safety, and environmental st...

    Anna Paola Carrieri, Niina Haiminen… in Computational Intelligence Methods for Bio… (2017)

  2. No Access

    Chapter and Conference Paper

    Topological Signatures for Population Admixture

    As populations with multilinear transmission (i.e., mixing of genetic material from two parents, say) evolve over generations, the genetic transmission lines constitute complicated networks. In contrast, unili...

    Laxmi Parida, Filippo Utro, Deniz Yorukoglu… in Research in Computational Molecular Biology (2015)

  3. No Access

    Chapter and Conference Paper

    Entropic Profiles, Maximal Motifs and the Discovery of Significant Repetitions in Genomic Sequences

    The degree of predictability of a sequence can be measured by its entropy and it is closely related to its repetitiveness and compressibility. Entropic profiles are useful tools to study the under- and over-re...

    Laxmi Parida, Cinzia Pizzi, Simona E. Rombo in Algorithms in Bioinformatics (2014)

  4. No Access

    Chapter and Conference Paper

    Best-Fit in Linear Time for Non-generative Population Simulation

    Constructing populations with pre-specified characteristics is a fundamental problem in population genetics and other applied areas. We present a novel non-generative approach that deconstructs the desired pop...

    Niina Haiminen, Claude Lebreton, Laxmi Parida in Algorithms in Bioinformatics (2014)

  5. No Access

    Chapter and Conference Paper

    IPED: Inheritance Path Based Pedigree Reconstruction Algorithm Using Genotype Data

    The problem of inference of family trees, or pedigree reconstruction, for a group of individuals is a fundamental problem in genetics. Various methods have been proposed to automate the process of pedigree rec...

    Dan He, Zhanyong Wang, Buhm Han… in Research in Computational Molecular Biology (2013)

  6. No Access

    Chapter and Conference Paper

    Characterization and Extraction of Irredundant Tandem Motifs

    We address the problem of extracting pairs of subwords (m 1,m 2) from a text string s of length n, such that, given also an integer constant d in input, m 1 and m ...

    Laxmi Parida, Cinzia Pizzi, Simona E. Rombo in String Processing and Information Retrieval (2012)

  7. No Access

    Book and Conference Proceedings

    Combinatorial Pattern Matching

    21st Annual Symposium, CPM 2010, New York, NY, USA, June 21-23, 2010. Proceedings

    Amihood Amir, Laxmi Parida in Lecture Notes in Computer Science (2010)

  8. No Access

    Chapter and Conference Paper

    Combinatorics in Recombinational Population Genomics

    The work that I will discuss is motivated by the need for understanding, and processing, the manifestations of recombination events in chromosome sequences. In this talk, we focus on two related problems. Firs...

    Laxmi Parida in Bioinformatics Research and Applications (2010)