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  1. Article

    Open Access

    Spectacle: fast chromatin state annotation using spectral learning

    Epigenomic data from ENCODE can be used to associate specific combinations of chromatin marks with regulatory elements in the human genome. Hidden Markov models and the expectation-maximization (EM) algorithm ...

    Jimin Song, Kevin C Chen in Genome Biology (2015)

  2. Article

    Open Access

    A comprehensive analysis of piRNAs from adult human testis and their relationship with genes and mobile elements

    Piwi-interacting RNAs (piRNAs) are a recently discovered class of small non-coding RNAs whose best-understood function is to repress mobile element (ME) activity in animal germline. To date, nearly all piRNA s...

    Hongseok Ha, Jimin Song, Shuoguo Wang, Aurélie Kapusta, Cédric Feschotte in BMC Genomics (2014)