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  1. Article

    Open Access

    Inhibition of the CCL2 receptor, CCR2, enhances tumor response to immune checkpoint therapy

    Immunotherapies targeting the PD-1/PD-L1 axis are now a mainstay in the clinical management of multiple cancer types, however, many tumors still fail to respond. CCL2 is highly expressed in various cancer type...

    Megan M. Tu, Hany A. Abdel-Hafiz, Robert T. Jones, Annie Jean in Communications Biology (2020)

  2. No Access

    Article

    A community effort to assess and improve drug sensitivity prediction algorithms

    A community of researchers report the lessons learned from applying 44 algorithms to predict drug sensitivity in cancer cell lines using genomic, epigenetic and proteomic datasets

    James C Costello, Laura M Heiser, Elisabeth Georgii, Mehmet Gönen in Nature Biotechnology (2014)

  3. No Access

    Article

    A community computational challenge to predict the activity of pairs of compounds

    A community computational challenge generates algorithms to predict activity of drug combinations.

    Mukesh Bansal, Jichen Yang, Charles Karan, Michael P Menden in Nature Biotechnology (2014)

  4. No Access

    Article

    Wisdom of crowds for robust gene network inference

    This analysis comprehensively compares methods for gene regulatory network inference submitted through the DREAM5 challenge. It demonstrates that integration of predictions from multiple methods shows the most...

    Daniel Marbach, James C Costello, Robert Küffner, Nicole M Vega in Nature Methods (2012)

  5. No Access

    Chapter and Conference Paper

    Limitations of Pseudogenes in Identifying Gene Losses

    The loss of previously established genes has been proposed as a major force in evolutionary change. While the sequencing of many new species offers the opportunity to identify cases of gene loss, the best meth...

    James C. Costello, Mira V. Han, Matthew W. Hahn in Comparative Genomics (2008)