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Isolation and characterization of 32 SNP markers in Spinibarbus hollandi based on restriction site-associated DNA sequencing (RADseq)

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  1. Article

    Open Access

    Unveiling biosynthetic potential of an Arctic marine-derived strain Aspergillus sydowii MNP-2

    A growing number of studies have demonstrated that the polar regions have the potential to be a significant repository of microbial resources and a potential source of active ingredients. Genome mining strateg...

    Zhiyang Fu, **angzhou Gong, Zhe Hu, Bin Wei, Huawei Zhang in BMC Genomics (2024)

  2. Article

    Open Access

    Metabolomics and proteomics insights into subacute ruminal acidosis etiology and inhibition of proliferation of yak rumen epithelial cells in vitro

    Untargeted metabolomics and proteomics were employed to investigate the intracellular response of yak rumen epithelial cells (YRECs) to conditions mimicking subacute rumen acidosis (SARA) etiology, including e...

    JunMei Wang, Liyuan Shi, **aohong Zhang, Rui Hu, Ziqi Yue, Huawei Zou in BMC Genomics (2024)

  3. Article

    Open Access

    Correction: Transcriptomics and metabolomics of blood, urine and ovarian follicular fuid of yak at induced estrus stage

    Huangqing Zhao, Yongzhen Huang, Shi Shu, Guowen Wang, Changqi Fu in BMC Genomics (2024)

  4. Article

    Open Access

    Transcriptomics and metabolomics of blood, urine and ovarian follicular fluid of yak at induced estrus stage

    To gain a deeper understanding of the metabolic differences within and outside the body, as well as changes in transcription levels following estrus in yaks, we conducted transcriptome and metabolome analyses ...

    Huangqing Zhao, Yongzhen Huang, Shi Shu, Guowen Wang, Changqi Fu in BMC Genomics (2024)

  5. Article

    Open Access

    The collateral activity of RfxCas13d can induce lethality in a RfxCas13d knock-in mouse model

    The CRISPR-Cas13 system is an RNA-guided RNA-targeting system and has been widely used in transcriptome engineering with potentially important clinical applications. However, it is still controversial whether ...

    Yunfei Li, Junjie Xu, Xuefei Guo, Zhiwei Li, Lili Cao, Shengde Liu in Genome Biology (2023)

  6. Article

    Open Access

    Phytohormone and integrated mRNA and miRNA transcriptome analyses and differentiation of male between hermaphroditic floral buds of andromonoecious Diospyros kaki Thunb

    Persimmon (Diospyros kaki Thunb.) has various labile sex types, and studying its sex differentiation can improve breeding efficiency. However, studies on sexual regulation patterns in persimmon have focused mainl...

    Huawei Li, Liyuan Wang, Yini Mai, Weijuan Han, Yu**g Suo, Songfeng Diao in BMC Genomics (2021)

  7. Article

    Open Access

    Prevention of acquired sensorineural hearing loss in mice by in vivo Htra2 gene editing

    Aging, noise, infection, and ototoxic drugs are the major causes of human acquired sensorineural hearing loss, but treatment options are limited. CRISPR/Cas9 technology has tremendous potential to become a new...

    ** Gu, Daqi Wang, Zhijiao Xu, **ghan Wang, Luo Guo, Renjie Chai in Genome Biology (2021)

  8. Article

    Open Access

    Genome-wide small RNA profiling reveals tiller development in tall fescue (Festuca arundinacea Schreb)

    Tall fescue (Festuca arundinacea Schreb.) is a major cool-season forage and turfgrass species. The low tiller density and size dramatically limits its turf performance and forage yield. MicroRNAs (miRNA)-genes mo...

    Tao Hu, Tao Wang, Huiying Li, Misganaw Wassie, Huawei Xu, Liang Chen in BMC Genomics (2020)

  9. Article

    Open Access

    Fine-tuning sugar content in strawberry

    Fine-tuning quantitative traits for continuous subtle phenotypes is highly advantageous. We engineer the highly conserved upstream open reading frame (uORF) of FvebZIPs1.1 in strawberry (Fragaria vesca), using ba...

    Sinian **ng, Kunling Chen, Haocheng Zhu, Rui Zhang, Huawei Zhang in Genome Biology (2020)

  10. Article

    Open Access

    Immune-related miRNA-mRNA regulation network in the livers of DHAV-3-infected ducklings

    Duck hepatitis A virus type 3 (DHAV-3) is one of the most harmful pathogens in the duck industry. However, the molecular mechanism underlying DHAV-3 infection in ducklings remains poorly understood. To study t...

    Fengyao Wu, Fengying Lu, **n Fan, ** Chao, Chuanmin Liu, Qunxing Pan in BMC Genomics (2020)

  11. Article

    Open Access

    Comprehensive analysis of microarray expression profiles of circRNAs and lncRNAs with associated co-expression networks in human colorectal cancer

    Increasing data demonstrate that circular RNAs (circRNAs) and long non-coding RNAs (lncRNAs) play important roles in tumorigenesis. However, the mechanisms in colorectal cancer (CRC) remain unclear. Here, hund...

    Yan Tian, Yu Xu, Huawei Wang, Ruo Shu, Liang Sun in Functional & Integrative Genomics (2019)

  12. Article

    Open Access

    Conferring DNA virus resistance with high specificity in plants using virus-inducible genome-editing system

    The CRISPR/Cas9 system has recently been engineered to confer resistance to geminiviruses in plants. However, we show here that the usefulness of this antiviral strategy is undermined by off-target effects ide...

    **ang Ji, **aomin Si, Yi Zhang, Huawei Zhang, Feng Zhang, Caixia Gao in Genome Biology (2018)

  13. Article

    Open Access

    AmpuBase: a transcriptome database for eight species of apple snails (Gastropoda: Ampullariidae)

    Gastropoda, with approximately 80,000 living species, is the largest class of Mollusca. Among gastropods, apple snails (family Ampullariidae) are globally distributed in tropical and subtropical freshwater eco...

    Jack C. H. Ip, Huawei Mu, Qian Chen, ** Sun, Santiago Ituarte in BMC Genomics (2018)

  14. Article

    Open Access

    Perfectly matched 20-nucleotide guide RNA sequences enable robust genome editing using high-fidelity SpCas9 nucleases

    High-fidelity SpCas9 variants (eSpCas9 and SpCas9-HF1) have been engineered to reduce off-target effects. We found that changes in guide RNA length induced significant reductions in the editing activities of S...

    Dingbo Zhang, Huawei Zhang, Tingdong Li, Kunling Chen, **-Long Qiu in Genome Biology (2017)

  15. Article

    Open Access

    Genome-wide association study identifies candidate genes for piglet splay leg syndrome in different populations

    Piglet splay leg syndrome (PSL) is one of the most frequent genetic defects, and can cause considerable economic loss in pig production. The present understanding of etiology and pathogenesis of PSL is poor. T...

    **ngjie Hao, Graham Plastow, Chunyan Zhang, Sutong Xu, Zhiqiu Hu in BMC Genetics (2017)

  16. Article

    Open Access

    Temperature expression patterns of genes and their coexpression with LncRNAs revealed by RNA-Seq in non-heading Chinese cabbage

    Non-heading Chinese cabbage (NHCC, Brassica rapa ssp. chinensis) is an important leaf vegetable grown worldwide. However, little is known about the molecular mechanisms underlying tolerance for extreme temperatur...

    **aoming Song, Gaofeng Liu, Zhinan Huang, Weike Duan, Huawei Tan, Ying Li in BMC Genomics (2016)

  17. Article

    The telosome/shelterin complex and its functions

    The telomeres that cap the ends of eukaryotic chromosomes serve a dual role in protecting the chromosome ends and in intracellular signaling for regulating cell proliferation. A complex of six telomere-associa...

    Huawei **n, Dan Liu, Zhou Songyang in Genome Biology (2008)